Channel:  ENCODE

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

136 Articles

Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development
Phanstiel, D. H., Van Bortle, K., Spacek, D. V., Hess, G. T., Saad Shamim, M., Machol, I., Love, M. I., Lieberman Aiden, E., Bassik, M. C., Snyder, M. P.
10.1101/142026 — Posted: 2017-05-25
The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state
Stamenova, E. K., Durand, N., Dudchenko, O., Shamim, M. S., Huang, S.-C., Jiang, Y., Bochkov, I. D., Rao, S. S. P., Lander, E. S., Gnirke, A., Aiden, E. L.
10.1101/481283 — Posted: 2018-11-29
Parallel Characterization of cis-Regulatory Elements for Multiple Genes Using CRISPRpath
Ren, X., Wang, M., Li, B., Jamieson, K., Zheng, L., Jones, I. R., Li, B., Takagi, M. A., Lee, J., Maliskova, L., Tam, T. W., Yu, M., Hu, R., Lee, L., Abnousi, A., Li, G., Li, Y., Hu, M., Ren, B., Wang, W., Shen, Y.
10.1101/2021.02.19.431931 — Posted: 2021-05-20
Chromatin Interaction Neural Network (ChINN): A machine learning-based method for predicting chromatin interactions from DNA sequences
Cao, F., Zhang, Y., Cai, Y., Animesh, S., Zhang, Y., Akincilar, S., Loh, Y. P., Chng, W. J., Tergaonkar, V., Kwoh, C. K., Fullwood, M.
10.1101/2020.12.30.424817 — Posted: 2021-01-03
Three-dimensional Genome Organization Maps in Normal Haematopoietic Stem Cells and Acute Myeloid Leukemia
Wang, B., Kong, L., Babu, D., Choudhary, R., Fam, W., Tng, J. Q., Goh, Y., Wong Jern Han, B., Liu, X., Song, F. F., Chia, P., Chan, M. C., An, O., Tham, C. Y., Benoukraf, T., Yang, H., Wang, W., Chng, W. J., Tenen, D., Fullwood, M. J.
10.1101/2020.04.18.047738 — Posted: 2021-04-06
MYC overexpression leads to increased chromatin interactions at superenhancers and c-Myc binding sites
See, Y. X., Chen, K., Fullwood, M. J.
10.1101/2021.01.04.425344 — Posted: 2021-01-05
Biop-C: A Method for Chromatin Interactome Analysis of Solid Cancer Needle Biopsy Samples
Animesh, S., Choudhary, R., Ng, X. Y., Tay, J. k. X., Chong, W.-Q., Goh, B. C., Fullwood, M.
10.1101/2021.01.11.426176 — Posted: 2021-01-12
Leveraging fine-mapping and non-European training data to improve cross-population polygenic risk scores
Weissbrod, O., Kanai, M., Shi, H., Gazal, S., Peyrot, W., Khera, A., Okada, Y., The Biobank Japan Project, , Martin, A., Finucane, H., Price, A. L.
10.1101/2021.01.19.21249483 — Posted: 2021-08-20
A cell atlas of chromatin accessibility across 25 adult human tissues
Zhang, K., Hocker, J. D., Miller, M., Hou, X., Chiou, J., Poirion, O. B., Qiu, Y., Li, Y. E., Gaulton, K. J., Wang, A., Preissl, S., Ren, B.
10.1101/2021.02.17.431699 — Posted: 2021-02-17
Discovery and Functional Characterization of Pro-growth Enhancers in Human Cancer Cells
Chen, P., Fiaux, P., Li, B., Zhang, K., Kubo, N., Jiang, S., Hu, R., Wu, S., Wang, M., Wang, W., McVicker, G. P., Mischel, P., Ren, B.
10.1101/2021.02.04.429675 — Posted: 2021-02-05

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