Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

467 Articles

Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression
Murphy, D., Salataj, E., Di Giammartino, D. C., Rodriguez-Hernaez, J., Kloetgen, A., Garg, V., Char, E., Uyehara, C. M., Ee, L.-s., Lee, U., Stadtfeld, M., Hadjantonakis, A.-K., Tsirigos, A., Polyzos, A., Apostolou, E.
10.1101/2023.07.19.549714 — Posted: 2023-07-19
High throughput PRIME editing screens identify functional DNA variants in the human genome
Ren, X., Yang, H., Nierenberg, J. L., Sun, Y., Chen, J., Beaman, C., Pham, T., Nobuhara, M., Takagi, M. A., Narayan, V., Li, Y., Ziv, E., Shen, Y.
10.1101/2023.07.12.548736 — Posted: 2023-07-12
Single cell susceptibility to SARS-CoV-2 infection is driven by variable cell states
Reffsin, S., Miller, J., Ayyanathan, K., Dunagin, M. C., Jain, N., Schultz, D. C., Cherry, S., Raj, A.
10.1101/2023.07.06.547955 — Posted: 2023-07-07
Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells
Pulecio, J., Tayyebi, Z., Liu, D., Wong, W., Luo, R., Damodaran, J. R., Kaplan, S., Cho, H., Yan, J., Murphy, D. J., Rickert, R., Shukla, A., Zhong, A., Gonzalez, F., Yang, D., Li, W., Zhou, T., Apostolou, E., Leslie, C., Huangfu, D.
10.1101/2023.06.14.544990 — Posted: 2023-06-14
SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress
Wolin, E., Guo, J. K., Blanco, M. R., Perez, A. A., Goronzy, I. N., Abdou, A. A., Gorhe, D., Guttman, M., Jovanovic, M.
10.1101/2023.06.05.543769 — Posted: 2023-06-07
Recording morphogen signals reveals origins of gastruloid symmetry breaking
McNamara, H. M., Solley, S. C., Adamson, B., Chan, M. M., Toettcher, J. E.
10.1101/2023.06.02.543474 — Posted: 2023-06-05
scGHOST: Identifying single-cell 3D genome subcompartments
Xiong, K., Zhang, R., Ma, J.
10.1101/2023.05.24.542032 — Posted: 2023-05-25
High-resolution spatial multi-omics reveals cell-type specific nuclear compartments
Takei, Y., Yang, Y., White, J., Yun, J., Prasad, M., Ombelets, L. J., Schindler, S., Cai, L.
10.1101/2023.05.07.539762 — Posted: 2023-05-09
The temporal progression of immune remodeling during metastasis.
McGinnis, C. S., Mao, Z., Reticker-Flynn, N. E., Winkler, J., Satpathy, A. T.
10.1101/2023.05.04.539153 — Posted: 2023-05-07
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation
Fang, H., Tronco, A. R., Bonora, G., Nguyen, T., Thakur, J., Berletch, J. B., Filippova, G. N., Henikoff, S., Shendure, J., Noble, W. S., Disteche, C. M., Deng, X.
10.1101/2023.05.04.539469 — Posted: 2023-05-04

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