Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

Measuring the reproducibility and quality of Hi-C data
Yardımcı, G. G., Ozadam, H., Sauria, M. E. G., Ursu, O., Yan, K.-K., Yang, T., Chakraborty, A., Kaul, A., Lajoie, B. R., Song, F., Zhan, Y., Ay, F., Gerstein, M., Kundaje, A., Li, Q., Taylor, J., Yue, F., Dekker, J., Noble, W. S.
10.1101/188755 — Posted: 2018-02-05
High-throughput identification of RNA nuclear enrichment sequences
Shukla, C. J., McCorkindale, A. L., Gerhardinger, C., Korthauer, K. D., Cabili, M. N., Shechner, D. M., Irizarry, R. A., Maass, P. G., Rinn, J. L.
10.1101/189654 — Posted: 2017-09-15
CRISPR-Based DNA Imaging in Living Cells Reveals Cell Cycle-Dependent Chromosome Dynamics
Ma, H., Tu, L.-C., Naseri, A., Chung, Y.-C., Grunwald, D., Zhang, S., Pederson, T.
10.1101/195966 — Posted: 2017-09-29
Chromatin Organization by an Interplay of Loop Extrusion and Compartmental Segregation
Nuebler, J., Fudenberg, G., Imakaev, M., Abdennur, N., Mirny, L.
10.1101/196261 — Posted: 2017-10-03
Nucleation of multiple buckled structures in intertwined DNA double helices
Brahmachari, S., Gunn, K. H., Giuntoli, R. D., Mondragon, A., Marko, J. F.
10.1101/196345 — Posted: 2017-09-30
Mechanics and buckling of biopolymeric shells and cell nuclei
Banigan, E. J., Stephens, A. D., Marko, J. F.
10.1101/197566 — Posted: 2017-10-02
Juicebox.js provides a cloud-based visualization system for Hi-C data
Robinson, J., Turner, D., Durand, N. C., Thorvaldsdottir, H., Mesirov, J. P., Aiden, E. L.
10.1101/205740 — Posted: 2017-10-19
Chromatin histone modifications and rigidity affect nuclear morphology independent of lamins
Stephens, A. D., Liu, P. Z., Banigan, E. J., Almassalha, L. M., Backman, V., Adam, S. A., Goldman, R., Marko, J.
10.1101/206367 — Posted: 2017-10-29
Dynamic and Selective Low-Complexity Domain Interactions Revealed by Live-Cell Single-Molecule Imaging
Chong, S., Dugast-Darzacq, C., Liu, Z., Dong, P., Dailey, G., Cattoglio, C., Banala, S., Lavis, L., Darzacq, X., Tjian, R.
10.1101/208710 — Posted: 2018-05-16
A Cell Type-Specific Class of Chromatin Loops Anchored at Large DNA Methylation Nadirs
Jeong, M., Huang, X., Zhang, X., Su, J., Shamim, M., Bochkov, I., Reyes, J., Jung, H., Heikamp, E., Presser Aiden, A., Li, W., Aiden, E., Goodell, M. A.
10.1101/212928 — Posted: 2017-11-09

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