Channel:  4D Nucleome

476 Articles

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FISHnet: Detecting chromatin domains in single-cell sequential Oligopaints imaging data
Patel, R., Pham, K., Chandrashekar, H., Phillips-Cremins, J. E.
10.1101/2024.06.18.599627 — Posted: 2024-06-18
HLH-30/TFEB rewires the chaperone network to promote proteostasis under conditions of Coenzyme A and Iron-Sulfur Cluster Deficiency
Shalash, R., Levi-Ferber, M., von Chrzanowski, H., Atrash, M. K., Shav-Tal, Y., Henis-Korenblit, S.
10.1101/2024.06.05.597553 — Posted: 2024-06-06
Improved cohesin HiChIP protocol and bioinformatic analysis for robust detection of chromatin loops and stripes
Jodkowska, K., Parteka-Tojek, Z., Agarwal, A., Denkiewicz, M., Korsak, S., Chilinski, M., Banecki, K., Plewczynski, D.
10.1101/2024.05.16.594268 — Posted: 2024-05-20
Super-enhancer interactomes from single cells link clustering and transcription
Le, D., Hafner, A., Gaddam, S., Wang, K., Boettiger, A. N.
10.1101/2024.05.08.593251 — Posted: 2024-05-10
MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing
Chandradoss, K. R., Su, C., Malachowski, T., Boya, R., Ryu, H.-S., Brennand, K., Phillips-Cremins, J. E.
10.1101/2024.04.29.591790 — Posted: 2024-05-02
Nanoscale cellular organization of viral RNA and proteins in SARS-CoV-2 replication organelles
Andronov, L., Han, M., Zhu, Y., Balaji, A., Roy, A. R., Barentine, A. E. S., Patel, P., Garhyan, J., Qi, L. S., Moerner, W. E.
10.1101/2023.11.07.566110 — Posted: 2024-04-01
Single-cell multiplex chromatin and RNA interactions in aging human brain
Wen, X., Luo, Z., Zhao, W., Calandrelli, R., Nguyen, T., Wan, X., Richard, J. L. C., Zhong, S.
10.1101/2023.06.28.546457 — Posted: 2024-03-04
Regulation of immune signal integration and memory by inflammation-induced chromosome conformation
Daniel, B., Chen, A. Y., Sandor, K., Zhang, W., Miao, Z., Lareau, C. A., Yost, K. E., Chang, H., Satpathy, A.
10.1101/2024.02.29.582872 — Posted: 2024-03-04
SUMO Promotes DNA Repair Protein Collaboration to Support Alterative Telomere Lengthening in the Absence of PML
Zhao, R., Xu, M., Wondisford, A. R., Lackner, R. M., Salsman, J., Dellaire, G., Chenoweth, D. M., O'Sullivan, R. J., Zhao, X., Zhang, H.
10.1101/2024.02.29.582813 — Posted: 2024-02-29
A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations
Chandrashekar, H., Simandi, Z., Choi, H., Ryu, H.-S., Waldman, A. J., Nikish, A., Muppidi, S. S., Gong, W., Paquet, D., Phillips-Cremins, J. E.
10.1101/2024.02.27.582395 — Posted: 2024-02-27

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