Channel:  4D Nucleome

476 Articles

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Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation
Titus, K. R., Simandi, Z., Chandrashekar, H., Paquet, D., Phillips-Cremins, J. E.
10.1101/2023.12.04.569731 — Posted: 2023-12-05
ChromaFactor: deconvolution of single-molecule chromatin organization with non-negative matrix factorization
Gunsalus, L. M., Keiser, M. J., Pollard, K. S.
10.1101/2023.11.22.568268 — Posted: 2023-11-22
Post-transcriptional splicing can occur in a slow-moving zone around the gene
Cote, A. J., O'Farrell, A., Dardani, I., Dunagin, M., Cote, C. J., Wan, Y., Bayatpour, S., Drexler, H. L., Alexander, K. A., Chen, F., Wassie, A. T., Patel, R., Pham, K., Boyden, E. S., Berger, S., Phillips-Cremins, J., Churchman, L. S., Raj, A.
10.1101/2020.04.06.028092 — Posted: 2023-11-13
Genome folding principles revealed in condensin-depleted mitotic chromosomes
Zhao, H., Lin, Y., Lin, E., Liu, F., Shu, L., Jing, D., Wang, B., Wang, M., Shan, F., Zhang, L., Lam, J., Midla, S., Giardine, B., Keller, C., Hardison, R., Blobel, G., Zhang, H.
10.1101/2023.11.09.566494 — Posted: 2023-11-13
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models
Gjoni, K., Pollard, K. S.
10.1101/2023.11.03.565556 — Posted: 2023-11-05
Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types
Kumar, P., Gholamalamdari, O., Zhang, Y., Zhang, L., Vertii, A., van Schaik, T., Peric-Hupkes, D., Sasaki, T., Gilbert, D. M., van Steensel, B., Ma, J., Kaufman, P. D., Belmont, A. S.
10.1101/2023.10.29.564613 — Posted: 2023-11-01
Exploring the Roles of RNAs in Chromatin Architecture Using Deep Learning
Kuang, S., Pollard, K. S.
10.1101/2023.10.22.563498 — Posted: 2023-10-24
Drug-Mediated Control of Receptor Valency Enhances Immune Cell Potency
Finn, P., Chavez, M., Chen, X., Wang, H., Rane, D. A., Gurjar, J., Qi, L. S.
10.1101/2023.01.04.522664 — Posted: 2023-10-22
Phase separation of Myc differentially regulates gene transcription
Yang, J., Chung, C.-I., Koach, J., Liu, H., Navalkar, A., Ma, Z., Zhao, Q., Yang, X., Mittag, T., Shen, Y., Weiss, W. A., Shu, X.
10.1101/2022.06.28.498043 — Posted: 2023-10-21
The H3.3 K36M oncohistone disrupts the establishment of epigenetic memory through loss of DNA methylation
Sinha, J., Nickels, J. F., Thurm, A. R., Ludwig, C. H., Archibald, B. N., Hinks, M. M., Wan, J., Fang, D., Bintu, L.
10.1101/2023.10.13.562147 — Posted: 2023-10-14

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