Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

451 Articles

Exploring the Roles of RNAs in Chromatin Architecture Using Deep Learning
Kuang, S., Pollard, K. S.
10.1101/2023.10.22.563498 — Posted: 2023-10-24
Drug-Mediated Control of Receptor Valency Enhances Immune Cell Potency
Finn, P., Chavez, M., Chen, X., Wang, H., Rane, D. A., Gurjar, J., Qi, L. S.
10.1101/2023.01.04.522664 — Posted: 2023-10-22
Phase separation of Myc differentially regulates gene transcription
Yang, J., Chung, C.-I., Koach, J., Liu, H., Navalkar, A., Ma, Z., Zhao, Q., Yang, X., Mittag, T., Shen, Y., Weiss, W. A., Shu, X.
10.1101/2022.06.28.498043 — Posted: 2023-10-21
The H3.3 K36M oncohistone disrupts the establishment of epigenetic memory through loss of DNA methylation
Sinha, J., Nickels, J. F., Thurm, A. R., Ludwig, C. H., Archibald, B. N., Hinks, M. M., Wan, J., Fang, D., Bintu, L.
10.1101/2023.10.13.562147 — Posted: 2023-10-14
Single-cell chromatin state transitions during epigenetic memory formation
Fujimori, T., Rios-Martinez, C., Thurm, A. R., Hinks, M. M., Doughty, B. R., Sinha, J., Le, D., Hafner, A., Greenleaf, W. J., Boettiger, A. N., Bintu, L.
10.1101/2023.10.03.560616 — Posted: 2023-10-05
Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells
Calandrelli, R., Wen, X., Charles Richard, J. L., Luo, Z., Nguyen, T. C., Chen, C.-J., Qi, Z., Xue, S., Chen, W., Yan, Z., Wu, W., Zaleta-Rivera, K., Hu, R., Yu, M., Wang, Y., Li, W., Ma, J., Ren, B., Zhong, S.
10.1101/2021.06.10.447969 — Posted: 2023-09-08
Functional characterization of gene regulatory elements and neuropsychiatric disease-associated risk loci in iPSCs and iPSC-derived neurons
Yang, X., Jones, I. R., Chen, P. B., Yang, H., Ren, X., Zheng, L., Li, B., Li, Y. E., Sun, Q., Wen, J., Beaman, C., Cui, X., Li, Y., Wang, W., Hu, M., Ren, B., Shen, Y.
10.1101/2023.08.30.555359 — Posted: 2023-08-30
Development and application of an uncapped mRNA platform
Zheng, X., Liu, B., Ni, P., Cai, L., Shi, X., Ke, Z., Zhang, S., Hu, B., Yang, B., Xu, Y., Long, W., Fang, Z., Wang, Y., Zhang, W., Xu, Y., Wang, Z., Pan, K., Zhou, K., Wang, H., Geng, H., Hu, H., Liu, B.
10.1101/2022.06.05.494796 — Posted: 2023-08-24
Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates axon guidance genes in Drosophila
Singh, B. N., Tran, H., Kramer, J., Kirichenko, E., Changela, N., Wang, F., Feng, Y., Kumar, D., Tu, M., Lan, J., Bizet, M., Fuks, F., Steward, R.
10.1101/2023.01.03.522592 — Posted: 2023-08-04
ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
Gao, V. R., Yang, R., Das, A., Luo, R., Luo, H., McNally, D. R., Karagiannidis, I., Rivas, M. A., Wang, Z.-m., Barisic, D., Karbalayghareh, A., Wong, W., Zhan, Y., Chin, C. R., Noble, W. S., Bilmes, J. A., Apostolou, E., Kharas, M., Beguelin, W., Viny, A. D., Huangfu, D., Rudensky, A., Melnick, A., Leslie, C. S.
10.1101/2023.07.27.550836 — Posted: 2023-07-28

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