Channel:  4D Nucleome

476 Articles

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Kinetic organization of the genome revealed by ultra-resolution, multiscale live imaging
Lee, J., Chen, L.-F., Gaudin, S., Gupta, K., Spakowitz, A., Boettiger, A.
10.1101/2025.03.27.645817 — Posted: 2025-04-01
Sequencing-free whole genome spatial transcriptomics at molecular resolution in intact tissue
Cheng, Y., Dang, S., Zhang, Y., Chen, Y., Yu, R., Liu, M., Jin, S., Han, A., Katz, S., Wang, S.
10.1101/2025.03.06.641951 — Posted: 2025-03-29
Human Body Single-Cell Atlas of 3D Genome Organization and DNA Methylation
Zhou, J., Wu, Y., Liu, H., Tian, W., Castanon, R. G., Bartlett, A., Zhang, Z., Yao, G., Shi, D., Clock, B., Marcotte, S., Nery, J. R., Liem, M., Claffey, N., Boggeman, L., Barragan, C., eDrigo, R. A., Weimer, A. K., Shi, M., Cooper-Knock, J., Zhang, S., Snyder, M. P., Preissl, S., Ren, B., O'Connor, C., Chen, S., Luo, C., Dixon, J. R., Ecker, J. R.
10.1101/2025.03.23.644697 — Posted: 2025-03-24
Rewired m6A methylation of promoter antisense RNAs in Alzheimer disease regulates global gene transcription in the 3D nucleome
Hu, B., Shi, Y., Xiong, F., Chen, Y.-T., Zhu, X., Carrillo, E., Wen, X., Drolet, N. A., Rajpurohit, C., Xu, X., Lee, D.-F., Soto, C., Zhong, S., Jayaraman, V., Zheng, H., LI, W.
10.1101/2025.03.22.644756 — Posted: 2025-03-24
Mosaic H3K9me3 at BREACHes predicts synaptic gene expression associated with fragile X syndrome cognitive severity
Pham, K., Malachowski, T., Zhou, L., Kim, J. H., Su, C., Phillips-Cremins, J. E.
10.1101/2025.03.19.644148 — Posted: 2025-03-19
Functional memory T cells are derived from exhausted clones and expanded by checkpoint blockade
Raposo, C. J., Yan, P. K., Chen, A. Y., Majidi, S., Hiam-Galvez, K. J., Satpathy, A. T.
10.1101/2025.02.10.637523 — Posted: 2025-02-15
Cryosectioning-enhanced super-resolution microscopy for single-protein imaging across cells and tissues
Stein, J., Ericsson, M., Nofal, M., Magni, L., Aufmkolk, S., McMillan, R. B., Breimann, L., Herlihy, C. P., Lee, S. D., Willemin, A., Wohlmann, J., Arguedas-Jimenez, L., Yin, P., Pombo, A., Church, G. M., Wu, C.-t.
10.1101/2024.02.05.576943 — Posted: 2025-02-13
Cohesin drives chromatin scanning during the RAD51-mediated homology search.
Marin-Gonzalez, A., Rybczynski, A. T., Nilavar, N. M., Nguyen, D., Karwacki- Neisius, V., Li, A. G., Zou, R. S., Aviles-Vazquez, F. J., Kanemaki, M. T., Scully, R., Ha, T.
10.1101/2025.02.10.637451 — Posted: 2025-02-11
Cis-regulatory chromatin contacts form de novo in the absence of loop extrusion
Aboreden, N., Zhao, H., Shan, F., Liu, F., Zhang, H., Blobel, G.
10.1101/2025.01.12.632634 — Posted: 2025-02-08
B cell stimulation changes the structure and higher-order organization of the inactive X chromosome
Toothacre, N., Anguera, M., Sierra, I.
10.1101/2025.01.30.635789 — Posted: 2025-02-02

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