Channel:  4D Nucleome

476 Articles

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An integrated view of the structure and function of the human 4D nucleome
The 4D Nucleome Consortium, , Dekker, J., Oksuz, B. A., Zhang, Y., Wang, Y., Minsk, M. K., Kuang, S., Yang, L., Gibcus, J. H., Krietenstein, N., Rando, O., Xu, J., Janssens, D. H., Henikoff, S., Kukalev, A., Willemin, A., Winick-Ng, W., Kempfer, R., Pombo, A., Yu, M., Kumar, P., Zhang, L., Belmont, A. S., Sasaki, T., van Schaik, T., Brueckner, L., Peric-Hupkes, D., van Steensel, B., Wang, P., Chai, H., Kim, M., Ruan, Y., Zhang, R., Quinodoz, S. A., Bhat, P., Guttman, M., Zhao, W., Chien, S., Liu, Y., Venev, S. V., Plewczynski, D., Irastorza Azcarate, I., Szabo, D., Thieme, C. J., Szczepinska
10.1101/2024.09.17.613111 — Posted: 2024-10-27
Heterogeneity in chromatin structure drives core regulatory pathways in B-cell Acute Lymphoblastic Leukemia
Sen, A., Xu, Z., Tyndale, S., Yasis, J., Cho, C. Y., Bump, R., Chandran, S., Luo, L., Fu, Y., Petersen, L. K., Shokhirev, M., Kuo, D. J., McVicker, G. P., Dixon, J. R.
10.1101/2024.10.04.616668 — Posted: 2024-10-05
The challenge of chromatin model comparison and validation a project from the first international 4D Nucleome Hackathon
Kubica, J., Korsak, S., Clerkin, A. B., Kouril, D., Schirman, D., Yadavalli, A. D., Banecki, K., Kadlof, M., Busby, B., Plewczynski, D.
10.1101/2024.10.02.616241 — Posted: 2024-10-03
Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
Popay, T. M., Pant, A., Munting, F., Black, M. E., Haghani, N., Dixon, J.
10.1101/2024.10.02.616323 — Posted: 2024-10-02
Deconvolving organogenesis in space and time via spatial transcriptomics in thick tissues
Asami, S., Yin, C., Garza, L. A., Kalhor, R.
10.1101/2024.09.24.614640 — Posted: 2024-09-24
Dynamics of microcompartment formation at the mitosis-to-G1 transition
Goel, V. Y., Aboreden, N. G., Jusuf, J. M., Zhang, H., Mori, L., Mirny, L. A., Blobel, G., Banigan, E. J., Hansen, A. S.
10.1101/2024.09.16.611917 — Posted: 2024-09-16
ATP-dependent remodeling of chromatin condensates uncovers distinct mesoscale effects of two remodelers
Moore, C. M., Kaur, U., Wong, E., Chio, U. S. M., Zhou, Z., Ostrowski, M., Wu, K., Irkliyenko, I., Wang, S., Ramani, V., Narlikar, G.
10.1101/2024.09.10.611504 — Posted: 2024-09-10
Tracing the evolution of single-cell cancer 3D genomes: an atlas for cancer gene discovery
Liu, M., Jin, S., Agabiti, S. S., Jensen, T. B., Yang, T., Radda, J. S. D., Ruiz, C. F., Baldissera, G., Rajaei, M., Townsend, J. P., Muzumdar, M. D., Wang, S.
10.1101/2023.07.23.550157 — Posted: 2024-09-09
HMGB1 restores a dynamic chromatin environment in the presence of linker histone by deforming nucleosomal DNA
Saunders, H. S., Chio, U. S., Moore, C. M., Ramani, V., Cheng, Y., Narlikar, G.
10.1101/2024.08.23.609244 — Posted: 2024-08-24
LDB1 establishes multi-enhancer networks to regulate gene expression
Aboreden, N. G., Lam, J. C., Goel, V. Y., Wang, S., Wang, X., Midla, S. C., Quijano, A., Keller, C. A., Giardine, B. M., Hardison, R. C., Zhang, H., Hansen, A. S., Blobel, G.
10.1101/2024.08.23.609430 — Posted: 2024-08-24

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