Channel: 4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

451 Articles

SUMO Promotes DNA Repair Protein Collaboration to Support Alterative Telomere Lengthening in the Absence of PML

Zhao, R., Xu, M., Wondisford, A. R., Lackner, R. M., Salsman, J., Dellaire, G., Chenoweth, D. M., O'Sullivan, R. J., Zhao, X., Zhang, H.

10.1101/2024.02.29.582813 — Posted: 2024-02-29

A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations

Chandrashekar, H., Simandi, Z., Choi, H., Ryu, H.-S., Waldman, A. J., Nikish, A., Muppidi, S. S., Gong, W., Paquet, D., Phillips-Cremins, J. E.

10.1101/2024.02.27.582395 — Posted: 2024-02-27

Induction and in silico staging of human gastruloids with neural tube, segmented somites & advanced cell types

Hamazaki, N., Yang, W., Kubo, C., Qiu, C., Martin, B. K., Garge, R. K., Regalado, S. G., Nichols, E., Lee, C., Daza, R. M., Srivatsan, S., Shendure, J.

10.1101/2024.02.10.579769 — Posted: 2024-02-12

Cryosectioning-enabled super-resolution microscopy for studying nuclear architecture at the single protein level

Stein, J., Ericsson, M., Nofal, M., Magni, L., Aufmkolk, S., McMillan, R. B., Breimann, L., Herlihy, C. P., Lee, S. D., Willemin, A., Wohlmann, J., Arguedas-Jimenez, L., Yin, P., Pombo, A., Church, G. M., Wu, C.-t.

10.1101/2024.02.05.576943 — Posted: 2024-02-05

HiCDiffusion - diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequences

Chilinski, M., Plewczynski, D.

10.1101/2024.02.01.578389 — Posted: 2024-02-05

Piscis: a novel loss estimator of the F1 score enables accurate spot detection in fluorescence microscopy images via deep learning

Niu, Z., O'Farrell, A., Li, J., Reffsin, S., Jain, N., Dardani, I., Goyal, Y., Raj, A.

10.1101/2024.01.31.578123 — Posted: 2024-01-31

Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis

Hildebrand, E. M., Polovnikov, K., Dekker, B., Liu, Y., Lafontaine, D. L., Fox, A. N., Li, Y., Venev, S. V., Mirny, L. A., Dekker, J.

10.1101/2022.10.15.511838 — Posted: 2024-01-30

Pseudotime analysis for time-series single-cell sequencing and imaging data

Li, G., Kim, H.-J., Pendyala, S., Zhang, R., Disteche, C. M., Vert, J.-P., Deng, X., Fowler, D. M., Noble, W. S.