Channel:  4D Nucleome

474 Articles

Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells
Pulecio, J., Tayyebi, Z., Liu, D., Wong, W., Luo, R., Damodaran, J. R., Kaplan, S., Cho, H., Yan, J., Murphy, D. J., Rickert, R., Shukla, A., Zhong, A., Gonzalez, F., Yang, D., Li, W., Zhou, T., Apostolou, E., Leslie, C., Huangfu, D.
10.1101/2023.06.14.544990 — Posted: 2023-06-14
SPIDR: a highly multiplexed method for mapping RNA-protein interactions uncovers a potential mechanism for selective translational suppression upon cellular stress
Wolin, E., Guo, J. K., Blanco, M. R., Perez, A. A., Goronzy, I. N., Abdou, A. A., Gorhe, D., Guttman, M., Jovanovic, M.
10.1101/2023.06.05.543769 — Posted: 2023-06-07
Recording morphogen signals reveals origins of gastruloid symmetry breaking
McNamara, H. M., Solley, S. C., Adamson, B., Chan, M. M., Toettcher, J. E.
10.1101/2023.06.02.543474 — Posted: 2023-06-05
scGHOST: Identifying single-cell 3D genome subcompartments
Xiong, K., Zhang, R., Ma, J.
10.1101/2023.05.24.542032 — Posted: 2023-05-25
High-resolution spatial multi-omics reveals cell-type specific nuclear compartments
Takei, Y., Yang, Y., White, J., Yun, J., Prasad, M., Ombelets, L. J., Schindler, S., Cai, L.
10.1101/2023.05.07.539762 — Posted: 2023-05-09
The temporal progression of immune remodeling during metastasis.
McGinnis, C. S., Mao, Z., Reticker-Flynn, N. E., Winkler, J., Satpathy, A. T.
10.1101/2023.05.04.539153 — Posted: 2023-05-07
CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation
Fang, H., Tronco, A. R., Bonora, G., Nguyen, T., Thakur, J., Berletch, J. B., Filippova, G. N., Henikoff, S., Shendure, J., Noble, W. S., Disteche, C. M., Deng, X.
10.1101/2023.05.04.539469 — Posted: 2023-05-04
Comparative single cell epigenomic analysis of gene regulatory programs in the rodent and primate neocortex
Zemke, N. R., Armand, E. J., Wang, W., Lee, S., Zhou, J., Li, Y. E., Liu, H., Tian, W., Nery, J. R., Castanon, R. G., Bartlett, A., Osteen, J. K., Li, D., Zhuo, X., Xu, V., Miller, M., Krienen, F. M., Zhang, Q., Taskin, N., Ting, J., Feng, G., McCarroll, S. A., Callaway, E. M., Wang, T., Behrens, M., Lein, E. S., Ecker, J. R., Ren, B.
10.1101/2023.04.08.536119 — Posted: 2023-04-08
Enhanced performance of gene expression predictive models with protein-mediated spatial chromatin interactions
Chilinski, M., Lipinski, J., Agarwal, A., Ruan, Y., Plewczynski, D.
10.1101/2023.04.06.535849 — Posted: 2023-04-06
Comparing chromatin contact maps at scale: methods and insights
Gunsalus, L. M., McArthur, E., Gjoni, K., Kuang, S., Pittman, M., Capra, J. A., Pollard, K. S.
10.1101/2023.04.04.535480 — Posted: 2023-04-04

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