Channel:  4D Nucleome

476 Articles

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Optogenetic control of the Bicoid morphogen reveals fast and slow modes of gap gene regulation
Singh, A. P., Wu, P., Ryabichko, S., Raimundo, J., Swan, M., Wieschaus, E., Gregor, T., Toettcher, J. E.
10.1101/2021.10.13.464280 — Posted: 2021-10-14
Spatiotemporal co-dependency between macrophages and exhausted CD8+ T cells in cancer
Kersten, K., Hu, K. H., Combes, A. J., Samad, B., Harwin, T., Ray, A., Rao, A. A., Cai, E., Marchuk, K., Artichoker, J., Courau, T., Shi, Q., Belk, J., Satpathy, A. T., Krummel, M. F.
10.1101/2021.09.27.461866 — Posted: 2021-09-28
Regional and clonal T cell dynamics at single cell resolution in immune checkpoint blockade
Pai, J. A., Chow, A., Sauter, J., Mattar, M., Rizvi, H., Woo, H. J., Shah, N., Uddin, F., Quintanal-Villalonga, A., Chan, J. M., Manoj, P., Allaj, V., Baine, M., Chaft, J. E., Plodkowski, A. J., Won, H., Wells, D., Donoghue, M. T. A., de Stanchina, E., Sen, T., Wolchok, J. D., Houck-Loomis, B., Merghoub, T., Rudin, C. M., Satpathy, A. T., Hellmann, M. D.
10.1101/2021.09.27.461389 — Posted: 2021-09-27
Biochemically distinct cohesin complexes mediate positioned loops between CTCF sites and dynamic loops within chromatin domains
Liu, Y., Dekker, J.
10.1101/2021.08.24.457555 — Posted: 2021-08-26
Pairs and Pairix: a file format and a tool for efficient storage and retrieval for Hi-C read pairs
Lee, S., Vitzthum, C., Alver, B. H., Park, P. J.
10.1101/2021.08.24.457552 — Posted: 2021-08-26
BCL6-dependent TCF-1+ progenitor cells maintain effector and helper CD4 T cell responses to persistent antigen
Xia, Y., Sandor, K., Pai, J. A., Daniel, B., Raju, S., Wu, R., Hsiung, S., Qi, Y., Yangdon, T., Okamoto, M., Schreiber, R. D., Murphy, K. M., Satpathy, A. T., Egawa, T.
10.1101/2021.08.06.455141 — Posted: 2021-08-09
Cell type determination for cardiac differentiation occurs soon after seeding of human induced pluripotent stem cells
Jiang, C. L., Goyal, Y., Jain, N., Wang, Q., Truitt, R. E., Cote, A. J., Emert, B., Mellis, I. A., Kiani, K., Yang, W., Jain, R., Raj, A.
10.1101/2021.08.08.455532 — Posted: 2021-08-08
Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers
Spracklin, G., Abdennur, N. A., Imakaev, M., Chowdhury, N., Pradhan, S., Mirny, L., Dekker, J.
10.1101/2021.08.05.455340 — Posted: 2021-08-06
ShinyArchR.UiO: User-friendly, integrative and open-source tool for visualisation of single-cell ATAC-seq data using ArchR
Sharma, A., Akshay, A., Rogne, M., Eskeland, R.
10.1101/2021.06.21.449316 — Posted: 2021-08-02
SARS-CoV-2 Restructures the Host Chromatin Architecture
Wang, R., Lee, J.-H., Xiong, F., Kim, J., Al Hasani, L., Yuan, X., Shivshankar, P., Krakowiak, J., Qi, C., Wang, Y., Eltzschig, H. K., Li, W.
10.1101/2021.07.20.453146 — Posted: 2021-07-21

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