bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples
Kang, K., Chong, H., Ning, K.
10.1101/2020.11.17.387811 — Posted: 2020-11-20 — Discussion: 2023-03-01  GigaScience
Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies.
Naranjo-Ortiz, M. A., Molina, M., Mixao, V., Gabaldon, T.
10.1101/2021.05.23.445324 — Posted: 2021-05-23 — Discussion: 2023-02-17  GigaScience
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga, C., Sanchez, E., Galvao Ferrarini, M., Gutierrez, R. A., Vidal, E. A., Sagot, M.-F.
10.1101/2020.08.07.240689 — Posted: 2020-08-07 — Discussion: 2023-02-17  GigaScience
A curated human cellular microRNAome based on 196 primary cell types
Patil, A. H., Baran, A., Brehm, Z., McCall, M. N., Halushka, M. K.
10.1101/2022.05.16.492160 — Posted: 2022-05-17 — Discussion: 2023-02-17  GigaScience
High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs
Tombacz, D., Dormo, A., Gulyas, G., Csabai, Z., Prazsak, I., Kakuk, B., Harangozo, A., Jankovics, I., Denes, B., Boldogkoi, Z.
10.1101/2021.08.20.457128 — Posted: 2021-08-20 — Discussion: 2023-02-17  GigaScience
Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize.
Mural, R. V., Sun, G., Grzybowski, M., Tross, M. C., Jin, H., Smith, C., Newton, L., Andorf, C. M., Woodhouse, M. R., Thompson, A. M., Sigmon, B. V., Schnable, J. C.
10.1101/2022.02.25.480753 — Posted: 2022-02-25 — Discussion: 2023-02-17  GigaScience
Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI
Kalyakulina, A., Yusipov, I., Bacalini, M. G., Franceschi, C., Vedunova, M., Ivanchenko, M.
10.1101/2022.05.10.491404 — Posted: 2022-05-11 — Discussion: 2023-02-17  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience
Loop detection using Hi-C data with HiCExplorer
Wolff, J., Backofen, R., Gruening, B.
10.1101/2020.03.05.979096 — Posted: 2020-03-06 — Discussion: 2023-02-15  GigaScience
Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification
Kanduri, C., Pavlovic, M., Scheffer, L., Motwani, K., Chernigovskaya, M., Greiff, V., Sandve, G. K.
10.1101/2021.05.23.445346 — Posted: 2021-05-23 — Discussion: 2023-02-15  GigaScience

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