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389 Reviews — GigaScience — All Subjects

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Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience
Streamlining remote nanopore data access with slow5curl
Wong, B., Ferguson, J. M., Gamaarachchi, H., Deveson, I. W.
10.1101/2023.11.28.569128 — Posted: 2023-11-30 — Discussion: 2024-05-13  GigaScience
Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
Jeon, S., Choi, H., Jeon, Y., Choi, W.-H., Choi, H., An, K., Ryu, H., Bhak, J., Lee, H., Kwon, Y., Ha, S., Kim, Y. J., Blazyte, A., Kim, C., Kim, Y., Kang, Y., Woo, Y. J., Lee, C., Seo, J., Bolser, D., Biro, O., Shin, E.-S., Kim, B. C., Kim, S.-Y., Park, J.-H., Jeon, J., Jung, D., Lee, S., Bhak, J.
10.1101/2022.12.25.521908 — Posted: 2022-12-26 — Discussion: 2024-05-13  GigaScience
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men
Jurado, M. R., Tombor, L. S., Arsalan, M., Holubec, T., Emrich, F., Walther, T., Zeiher, A. M., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2023.03.15.532742 — Posted: 2023-03-15 — Discussion: 2024-05-12  GigaScience
Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms
Alcala, N., Voegele, C., Mangiante, L., Sexton-Oates, A., Clevers, H., Fernandez-Cuesta, L., Dayton, T. L., Foll, M.
10.1101/2023.08.31.555732 — Posted: 2023-09-03 — Discussion: 2024-04-08  GigaScience
The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis
Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.
10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11  GigaScience
Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data
Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.
10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11  GigaScience
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes
Chen, S. H., Martino, A. M., Luo, Z., Schwessinger, B., Jones, A., Tolessa, T., Bragg, J. G., Tobias, P. A., Edwards, R. J.
10.1101/2023.04.27.538497 — Posted: 2023-04-28 — Discussion: 2024-01-22  GigaScience

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