bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data
Yang, C., Zhang, Z., Liao, H., Zhang, L.
10.1101/2022.08.10.503458 — Posted: 2022-08-13 — Discussion: 2024-07-01  GigaScience
Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi
Baroncelli, R., Cobo-Diaz, J. F., Benocci, T., Peng, M., Battaglia, E., Haridas, S., Andreopoulos, W., LaButti, K., Pangilinan, J., Lipzen, A., Koriabine, M., Bauer, D., Le Floch, G., Makela, M. R., Drula, E., Henrissat, B., Grigoriev, I. V., Crouch, J. A., de Vries, R. P., Sukno, S. A., Thon, M. R.
10.1101/2022.09.22.508453 — Posted: 2022-09-22 — Discussion: 2024-07-01  GigaScience
On the variability of dynamic functional connectivity assessment methods
Torabi, M., Mitsis, G. D., Poline, J.-B.
10.1101/2023.07.13.548883 — Posted: 2023-07-15 — Discussion: 2024-05-13  GigaScience
SRY: An Effective Method for Sorting Long Reads of Sex-limited Chromosome
Wang, X., Liu, Q., Li, A., Ruan, J.
10.1101/2020.05.25.115592 — Posted: 2020-05-28 — Discussion: 2024-05-13  GigaScience
Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience
IPEV: Identification of Prokaryotic and Ekaryotic Vrus-derived sequences in virome using deep learning
Yin, H., Wu, S., Tan, J., Guo, Q., Li, M., Jiang, X., Zhu, H.
10.1101/2023.05.28.541705 — Posted: 2023-05-30 — Discussion: 2024-05-13  GigaScience
Streamlining remote nanopore data access with slow5curl
Wong, B., Ferguson, J. M., Gamaarachchi, H., Deveson, I. W.
10.1101/2023.11.28.569128 — Posted: 2023-11-30 — Discussion: 2024-05-13  GigaScience
Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
Jeon, S., Choi, H., Jeon, Y., Choi, W.-H., Choi, H., An, K., Ryu, H., Bhak, J., Lee, H., Kwon, Y., Ha, S., Kim, Y. J., Blazyte, A., Kim, C., Kim, Y., Kang, Y., Woo, Y. J., Lee, C., Seo, J., Bolser, D., Biro, O., Shin, E.-S., Kim, B. C., Kim, S.-Y., Park, J.-H., Jeon, J., Jung, D., Lee, S., Bhak, J.
10.1101/2022.12.25.521908 — Posted: 2022-12-26 — Discussion: 2024-05-13  GigaScience
Improved integration of single cell transcriptome data demonstrated on heart failure in mice and men
Jurado, M. R., Tombor, L. S., Arsalan, M., Holubec, T., Emrich, F., Walther, T., Zeiher, A. M., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2023.03.15.532742 — Posted: 2023-03-15 — Discussion: 2024-05-12  GigaScience
Multi-omic dataset of patient-derived tumor organoids of neuroendocrine neoplasms
Alcala, N., Voegele, C., Mangiante, L., Sexton-Oates, A., Clevers, H., Fernandez-Cuesta, L., Dayton, T. L., Foll, M.
10.1101/2023.08.31.555732 — Posted: 2023-09-03 — Discussion: 2024-04-08  GigaScience

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