bioRxiv/medRxiv TRiP Review Activity

389 Reviews — GigaScience — All Subjects

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CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome
Barbosa, M. C., da Silva, J. F. M., Alves, L. C., Finn, R. D., Paschoal, A. R.
10.1101/2024.07.18.604052 — Posted: 2024-07-19 — Discussion: 2025-07-08  GigaScience
Health Data Nexus: An Open Data Platform for AI Research and Education in Medicine
Adams, J. L., Cymerys, R., Szuster, K., Hekman, D., Salo, Z., Solanki, R., Mamdani, M., Johnson, A., Ryniak, K., Pollard, T. L., Rotenberg, D., Haibe-Kains, B.
10.1101/2024.08.23.24312060 — Posted: 2024-08-23 — Discussion: 2025-07-08  GigaScience
The FIP 1.0 Data Set: Highly Resolved Annotated Image Time Series of 4,000 Wheat Plots Grown in Six Years
Roth, L., Boss, M., Kirchgessner, N., Aasen, H., Aguirre-Cuellar, B. P., Akiina, P. P. A., Anderegg, J., Gajardo Castillo, J., Chen, X., Corrado, S., Cybulski, K., Keller, B., Kortstee, S. G., Kronenberg, L., Liebisch, F., Nousi, P., Oppliger, C., Perich, G., Pfeifer, J., Yu, K., Storni, N., Tschurr, F., Volpi, M., Treier, S., Zellweger, H., Zumsteg, O., Hund, A., Walter, A.
10.1101/2024.10.04.616624 — Posted: 2024-10-05 — Discussion: 2025-07-08  GigaScience
Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database
Ikeda, S., Zou, Z., Bono, H., Moriya, Y., Kawashima, S., Katayama, T., Oki, S., Ohta, T.
10.1101/2025.02.17.638570 — Posted: 2025-02-22 — Discussion: 2025-07-08  GigaScience
Chromosome-level genome assembly and methylome profile enables insights for the conservation of endangered loggerhead sea turtles
Yen, E. C., Gilbert, J. D., Balard, A., Taxonera, A., Fairweather, K., Ford, H. L., Thorburn, D.-M. J., Rossiter, S. J., Martin-Duran, J. M., Eizaguirre, C.
10.1101/2024.08.28.610089 — Posted: 2024-08-28 — Discussion: 2025-07-08  GigaScience
Chromosome-level reference genome for the medically important Arabian horned viper (Cerastes gasperettii)
Mochales Riano, G., Hirst, S. R., Talavera, A., Burriel-Carranza, B., Pagone, V., Estarellas, M., Busschau, T., Boissinot, S., Hogan, M. P., Tena-Garces, J., Pla, D., Calvete, J. J., Els, J., Margres, M. J., Carranza, S.
10.1101/2024.07.29.605543 — Posted: 2024-07-29 — Discussion: 2025-07-08  GigaScience
CellBinDB: A Large-Scale Multimodal Annotated Dataset for Cell Segmentation with Benchmarking of Universal Models
Shi, C., Fan, J., Deng, Z., Liu, H., Kang, Q., Li, Y., Guo, J., Wang, J., Gong, J., Liao, S., Chen, A., Zhang, Y., Li, M.
10.1101/2024.11.20.619750 — Posted: 2024-11-21 — Discussion: 2025-07-08  GigaScience
Analysis-ready VCF at Biobank scale using Zarr
Czech, E. A., Millar, T. R., White, T. E., Jeffery, B., Miles, A., Tallman, S., Wojdyla, R., Zabad, S., Hammerbacher, J., Kelleher, J.
10.1101/2024.06.11.598241 — Posted: 2024-06-12 — Discussion: 2025-07-08  GigaScience
The first near-complete genome assembly of pig: enabling more accurate genetic research
Cao, C., Miao, J., Xie, Q., Sun, J., Cheng, H., Zhang, Z., Wu, F., Liu, S., Ye, X., Zhang, Z., Wang, Q., Pan, Y., Wang, Z.
10.1101/2024.10.13.617951 — Posted: 2024-10-15 — Discussion: 2025-06-03  GigaScience
External validation of machine learning models - registered models and adaptive sample splitting
Gallitto, G., Englert, R., Kincses, B., Kotikalapudi, R., Li, J., Bingel, U., Spisak, T.
10.1101/2023.12.01.569626 — Posted: 2023-12-04 — Discussion: 2025-06-03  GigaScience

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