bioRxiv/medRxiv TRiP Review Activity

381 Reviews — GigaScience — All Subjects

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External validation of machine learning models - registered models and adaptive sample splitting
Gallitto, G., Englert, R., Kincses, B., Kotikalapudi, R., Li, J., Bingel, U., Spisak, T.
10.1101/2023.12.01.569626 — Posted: 2023-12-04 — Discussion: 2025-06-03  GigaScience
Spatial Integration of Multi-Omics Data using the novel Multi-Omics Imaging Integration Toolset
Wess, M., Andersen, M. K., Midtbust, E., Guillem, J. C. C., Viset, T., Storkersen, O., Krossa, S., Rye, M., Tessem, M.-B.
10.1101/2024.06.11.598306 — Posted: 2024-06-12 — Discussion: 2025-06-03  GigaScience
The first near-complete genome assembly of pig: enabling more accurate genetic research
Cao, C., Miao, J., Xie, Q., Sun, J., Cheng, H., Zhang, Z., Wu, F., Liu, S., Ye, X., Zhang, Z., Wang, Q., Pan, Y., Wang, Z.
10.1101/2024.10.13.617951 — Posted: 2024-10-15 — Discussion: 2025-06-03  GigaScience
RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species
Kainer, D., Lane, M., Sullivan, K. A., Miller, J. I., Cashman, M., Morgan, M., Cliff, A., Romero, J., Walker, A., Blair, D. D., Chhetri, H., Wang, Y., Pavicic, M., Furches, A., Noshay, J., Drake, M., Landry, N., Ireland, A., Missaoui, A., Kang, Y., Sedbrook, J., Dehal, P., Canon, S., Jacobson, D. A.
10.1101/2024.07.17.603975 — Posted: 2024-07-19 — Discussion: 2025-05-06  GigaScience
Defining the limits of plant chemical space: challenges and estimations
Hart, C. E., Gadiya, Y., Kind, T., Krettler, C. A., Gaetz, M., Misra, B. B., Healey, D., Allen, A., Colluru, V., Domingo-Fernandez, D.
10.1101/2025.01.08.631938 — Posted: 2025-01-13 — Discussion: 2025-05-06  GigaScience
Network-based anomaly detection algorithm reveals proteins with major roles in human tissues
Kagan, D., Jubran, J., Yeger-Lotem, E., Fire, M.
10.1101/2023.12.19.572354 — Posted: 2023-12-20 — Discussion: 2025-04-28  GigaScience
Genomic and transcriptomic analyses of Heteropoda venatoria reveal the expansion of P450 family for starvation resistance in spider
Zhang, G., Wang, Y., Jiang, H., Wang, Y.
10.1101/2024.07.31.605936 — Posted: 2024-07-31 — Discussion: 2025-04-03  GigaScience
Healthy microbiome - moving towards functional interpretation
Zielinska, K., Rudnicki, W., Kosciolek, T., Labaj, P. P.
10.1101/2023.12.04.569909 — Posted: 2023-12-05 — Discussion: 2025-04-03  GigaScience
Genomic evidence for hybridization and introgression between blue peafowl and green peafowl and selection for white plumage
Wang, G., Ban, L., Zhang, X., Zhao, X., Ren, X., Chen, A., Zhang, L., Lu, Y., Jiang, Z., Zhao, X., Wen, J., Zhang, Y., Cheng, X., Wang, H., Dai, W., Liu, Y., Ning, Z., Qu, L.
10.1101/2023.12.27.573425 — Posted: 2023-12-27 — Discussion: 2025-03-03  GigaScience
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
LU, T., Wang, X., Nie, W., Huo, M., Li, S.
10.1101/2025.01.20.634002 — Posted: 2025-01-24 — Discussion: 2025-03-03  GigaScience

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