bioRxiv/medRxiv TRiP Review Activity

456 Reviews — GigaScience — All Subjects

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EXTENDING PROTEIN LANGUAGE MODELS TO A VIRAL GENOMIC SCALE USING BIOLOGICALLY INDUCED SPARSE ATTENTION
Dejean, T. L., Ferrell, B. D., Sawhney, R., Harrigan, W., Polson, S. W., Wommack, K. E., Belcaid, M.
10.1101/2025.05.29.656907 — Posted: 2025-06-01 — Discussion: 2026-08-07  GigaScience
KG-Microbe - Building Modular and Scalable Knowledge Graphs for Microbiome and Microbial Sciences
Santangelo, B. E., Caufield, J. H., Reese, J., Kliegr, T., Hunter, L. E., Lozupone, C. A., Hegde, H., Joachimiak, M. P.
10.1101/2025.02.24.639989 — Posted: 2025-02-28 — Discussion: 2026-08-07  GigaScience
ScopeViewer: A Browser-Based Solution for Visualizing Spatial Transcriptomics Data
Luo, D., Robertson, S., Zhan, Y., Rong, R., Wang, S., Jiang, X., Yang, S., Palmer, S., Jia, L., Li, Q., Xiao, G., Zhan, X.
10.1101/2023.07.24.549256 — Posted: 2023-07-25 — Discussion: 2026-08-07  GigaScience
NanoporeDB: A Structural Resource Of Multimeric Protein Nanopores In Single-Molecule Sensing
Liu, Y., Su, Z., Yang, W., Li, D., Zhang, J., Zhang, Y., Zeng, T., Zhang, Y., Li, Y., Fan, G., Ma, K., Liu, S., Xu, X., Dong, Y., Wang, Z.
10.1101/2025.11.25.690617 — Posted: 2025-11-28 — Discussion: 2026-08-07  GigaScience
Comparison of Deep Learning Approaches for Extreme Low-SNR Image Restoration
Buhn, N. E., Adunur, S. R., Hamilton, J., Levis, S., Hagen, G. M., Ventura, J.
10.64898/2026.01.16.700026 — Posted: 2026-01-20 — Discussion: 2026-08-07  GigaScience
CPSM: R-package of an Automated Machine Learning Pipeline for Predicting the Survival Probability of Single Cancer Patient
Kaur, H. T., Das, P., Camphausen, K., Shankavaram, U. T.
10.1101/2024.11.14.623597 — Posted: 2024-11-15 — Discussion: 2026-08-07  GigaScience
ChatMDV: Democratising Bioinformatics Analysis Using Large Language Models
Kiourlappou, M., Todd, P., Kong, Y., Hire, J., Nawab Mohammed, S. F., Sergeant, M., Zohren, S., Hughes, J., Taylor, S.
10.1101/2025.08.26.671083 — Posted: 2025-08-27 — Discussion: 2026-08-07  GigaScience
Context-aware simulation enables systematic optimization of long-read mapping parameters
Hu, J., Fang, D., Jin, X., Yang, C.
10.64898/2025.12.04.692264 — Posted: 2025-12-08 — Discussion: 2026-08-07  GigaScience
PathoFact 2.0: An Integrative Pipeline for Predicting Antimicrobial Resistance Genes, Virulence Factors, Toxins and Biosynthetic Gene Clusters in Metagenomes
Sunyer, J. O., Delgado, L. F., Hickl, O., Laczny, C. C., May, P., Wilmes, P.
10.1101/2024.12.09.627531 — Posted: 2024-12-11 — Discussion: 2026-07-10  GigaScience
Cell type transcriptomics reveal shared genetic mechanisms in Alzheimer's and Parkinson's disease
Bhattacharya, A., Fon, E. A., Dagher, A., Iturria-Medina, Y., STRATTON, J. A., Savignac, C., Stanley, J., Hodgson, L., Hammou, B. A., Bennett, D. A., Bzdok, D.
10.1101/2025.02.17.638647 — Posted: 2025-02-19 — Discussion: 2026-07-10  GigaScience

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