bioRxiv/medRxiv TRiP Review Activity

442 Reviews — GigaScience — All Subjects

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HVRLocator: A Computationally Efficient Tool for Identifying Hypervariable Regions in 16S rRNA Big Datasets

Arboleda-Baena, C., Borim Correa, F., Saraiva, J. P., Castillo, S., Kasmanas, J. C., Chatzinotas, A., Jurburg, S. D.

10.1101/2025.07.24.666487 — Posted: 2025-07-29 — Discussion: 2026-04-28 GigaScience

MicroFinder: Conserved gene-set mapping and assembly ordering for manual curation of bird microchromosomes

Mathers, T. C., Paulini, M., Sotero-Caio, C. G., Wood, J. M. D.

10.1101/2025.05.09.653066 — Posted: 2025-05-14 — Discussion: 2026-04-28 GigaScience

scfetch: an R package to access and format single-cell RNA sequencing datasets from public repositories

Song, Y., Gao, J., Wang, J.

10.1101/2023.11.18.567507 — Posted: 2023-11-20 — Discussion: 2026-04-28 GigaScience

Sex Chromosome Turnover and Structural Interspecific Genome Divergence Shapes Meiotic Outcomes in Hybridizing Cobitis

Schlebusch, S., Trifonov, V., Halenkova, Z., Klianitskaya, M., Dedukh, D., Ruiz Herrera, A., Alvarez Gonzalez, L., Pujol Infantes, G., Hribova, E., Andjel, L., Bartos, O., Pajer, P., Tichopad, T., Kulik, D., Kotusz, J., Dolezalkova-Kastankova, M., Bohne, A., Marta, A., Horna, P., Reifova, R., Guiguen, Y., Paces, J., Janko, K.

10.1101/2025.04.01.646337 — Posted: 2025-04-06 — Discussion: 2026-04-10 GigaScience

MADRe: Strain-Level Metagenomic Classification Through Assembly-Driven Database Reduction

Lipovac, J., Sikic, M., Vicedomini, R., Krizanovic, K.

10.1101/2025.05.12.653324 — Posted: 2025-05-15 — Discussion: 2026-04-10 GigaScience

Patterns of aDNA Damage Through Time end Environments, lessons from herbarium specimens

Porrelli, S., Fornasiero, A., Le, P. H., Yin, W., Navarrete Rodriguez, M., Mohammed, N., Himmelbach, A., Clarke, A. C., Stein, N., Kersey, P. J., Wing, R. A., Gutaker, R. M.

10.1101/2025.10.26.684600 — Posted: 2025-10-26 — Discussion: 2026-04-10 GigaScience

Characterising a species-rich and understudied tropical insect fauna using DNA barcoding

Hemprich-Bennett, D. R., Donkor, E., Adams, B., Acquaah, N. A., Ofori, E. D., Anie-Amoah, S., Bailey, A., Godfray, H. C. J., Lewis, O. T., Aboagye-Antwi, F., Hackett, T. D.

10.1101/2025.09.30.675770 — Posted: 2025-10-01 — Discussion: 2026-04-10 GigaScience

scDenorm: a denormalisation tool for integrating single-cell transcriptomics data

Huang, Y., Pournara, A. V., Ao, Y., Yang, L., Zhang, H., Zhang, Y., Liu, S., Brazma, A., Papatheodorou, I., Yang, X., Shi, M., Miao, Z.

10.1101/2025.05.10.653289 — Posted: 2025-05-15 — Discussion: 2026-04-09 GigaScience

MIReVTD, a Minimum Information Standard for Reporting Vector Trait Data

Ryan, S. J., Huxley, P., Lippi, C., Pawar, S., Cator, L., Rund, S. S. C., Johnson, L. R.

10.1101/2025.01.27.634769 — Posted: 2025-01-28 — Discussion: 2026-03-20 GigaScience

Comparative analysis of eccDNA and circRNA tools shows increased accuracy of tool combination

Zabala, A., Ascension, A. M., Prada-Luengo, I., Otaegui, D.

10.1101/2025.07.14.664708 — Posted: 2025-07-18 — Discussion: 2026-03-20 GigaScience