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406 Reviews — GigaScience — All Subjects

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Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi
Baroncelli, R., Cobo-Diaz, J. F., Benocci, T., Peng, M., Battaglia, E., Haridas, S., Andreopoulos, W., LaButti, K., Pangilinan, J., Lipzen, A., Koriabine, M., Bauer, D., Le Floch, G., Makela, M. R., Drula, E., Henrissat, B., Grigoriev, I. V., Crouch, J. A., de Vries, R. P., Sukno, S. A., Thon, M. R.
10.1101/2022.09.22.508453 — Posted: 2022-09-22 — Discussion: 2024-07-01  GigaScience
LRTK: A unified and versatile toolkit for analyzing linked-read sequencing data
Yang, C., Zhang, Z., Liao, H., Zhang, L.
10.1101/2022.08.10.503458 — Posted: 2022-08-13 — Discussion: 2024-07-01  GigaScience
ntsm: an alignment-free, ultra low coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection
Chu, J., Rong, J., Feng, X., Li, H.
10.1101/2023.11.01.565041 — Posted: 2023-11-03 — Discussion: 2024-07-01  GigaScience
Exploring polymorphic interspecies structural variants in Eucalyptus: Unravelling Their Role in Reproductive Isolation and Adaptive Divergence.
Ferguson, S., Jones, A., Murray, K. D., Andrew, R. L., Bothwell, H., Schwessinger, B., Borevitz, J. O.
10.1101/2023.10.20.563207 — Posted: 2023-10-21 — Discussion: 2024-07-01  GigaScience
On the variability of dynamic functional connectivity assessment methods
Torabi, M., Mitsis, G. D., Poline, J.-B.
10.1101/2023.07.13.548883 — Posted: 2023-07-15 — Discussion: 2024-05-13  GigaScience
IPEV: Identification of Prokaryotic and Ekaryotic Vrus-derived sequences in virome using deep learning
Yin, H., Wu, S., Tan, J., Guo, Q., Li, M., Jiang, X., Zhu, H.
10.1101/2023.05.28.541705 — Posted: 2023-05-30 — Discussion: 2024-05-13  GigaScience
Comparison of computational methods for host removal and classification of mycobacteria from clinical metagenomic data
Hall, M. B., Coin, L. J. M.
10.1101/2023.09.18.558339 — Posted: 2023-09-19 — Discussion: 2024-05-13  GigaScience
Streamlining remote nanopore data access with slow5curl
Wong, B., Ferguson, J. M., Gamaarachchi, H., Deveson, I. W.
10.1101/2023.11.28.569128 — Posted: 2023-11-30 — Discussion: 2024-05-13  GigaScience
SRY: An Effective Method for Sorting Long Reads of Sex-limited Chromosome
Wang, X., Liu, Q., Li, A., Ruan, J.
10.1101/2020.05.25.115592 — Posted: 2020-05-28 — Discussion: 2024-05-13  GigaScience
Korea4K: whole genome sequences of 4,157 Koreans with 107 phenotypes derived from extensive health check-ups
Jeon, S., Choi, H., Jeon, Y., Choi, W.-H., Choi, H., An, K., Ryu, H., Bhak, J., Lee, H., Kwon, Y., Ha, S., Kim, Y. J., Blazyte, A., Kim, C., Kim, Y., Kang, Y., Woo, Y. J., Lee, C., Seo, J., Bolser, D., Biro, O., Shin, E.-S., Kim, B. C., Kim, S.-Y., Park, J.-H., Jeon, J., Jung, D., Lee, S., Bhak, J.
10.1101/2022.12.25.521908 — Posted: 2022-12-26 — Discussion: 2024-05-13  GigaScience

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