bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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The probability of edge existence due to node degree: a baseline for network-based predictions
Zietz, M., Himmelstein, D. S., Kloster, K., Williams, C., Nagle, M. W., Greene, C. S.
10.1101/2023.01.05.522939 — Posted: 2023-01-06 — Discussion: 2024-03-04  GigaScience
Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data
Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.
10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11  GigaScience
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis
Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.
10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11  GigaScience
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes
Chen, S. H., Martino, A. M., Luo, Z., Schwessinger, B., Jones, A., Tolessa, T., Bragg, J. G., Tobias, P. A., Edwards, R. J.
10.1101/2023.04.27.538497 — Posted: 2023-04-28 — Discussion: 2024-01-22  GigaScience
Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning
Rehfeldt, T. G., Krawczyk, K., Echers, S. G., Marcatili, P., Palczynski, P., Roettger, R., Schwaemmle, V.
10.1101/2023.05.01.538996 — Posted: 2023-05-02 — Discussion: 2024-01-02  GigaScience
When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes
Cosma, B. M., Shirali Hossein Zade, R., Jordan, E. N., van Lent, P., Peng, C., Pillay, S., Abeel, T.
10.1101/2023.01.30.526229 — Posted: 2023-02-02 — Discussion: 2024-01-02  GigaScience
Finding the LMA needle in the wheat proteome haystack.
Vincent, D., Bui, A., Ram, D., Ezernieks, V., Shahinfar, S., Luke, T., Rochfort, S., Rigas, N., Panozzo, J., Daetwyler, H., Hayden, M. J.
10.1101/2023.01.22.525108 — Posted: 2023-01-23 — Discussion: 2024-01-02  GigaScience
cellsnake: a user-friendly tool for single cell RNA sequencing analysis
Umu, S. U., Rapp Vander-Elst, K., Karlsen, V. T., Chouliara, M., Baekkevold, E. S., Jahnsen, F. L., Domanska, D.
10.1101/2023.05.03.539204 — Posted: 2023-05-04 — Discussion: 2023-11-13  GigaScience
Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections
Aso, H., Ito, J., Ozaki, H., Kashima, Y., Suzuki, Y., Koyanagi, Y., Sato, K.
10.1101/2022.12.06.519403 — Posted: 2022-12-07 — Discussion: 2023-11-13  GigaScience

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