bioRxiv/medRxiv TRiP Review Activity

442 Reviews — GigaScience — All Subjects

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Machine Learning Made Easy (MLme): A Comprehensive Toolkit for Machine Learning-Driven Data Analysis

Akshay, A., Katoch, M., Shekarchizadeh, N., Abedi, M., Sharma, A., C. Burkhard, F., M. Adam, R., Monastyrskaia, K., Hashemi Gheinani, A.

10.1101/2023.07.04.546825 — Posted: 2023-07-04 — Discussion: 2024-02-11 GigaScience

Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data

Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.

10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11 GigaScience

A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes

Chen, S. H., Martino, A. M., Luo, Z., Schwessinger, B., Jones, A., Tolessa, T., Bragg, J. G., Tobias, P. A., Edwards, R. J.

10.1101/2023.04.27.538497 — Posted: 2023-04-28 — Discussion: 2024-01-22 GigaScience

Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning

Rehfeldt, T. G., Krawczyk, K., Echers, S. G., Marcatili, P., Palczynski, P., Roettger, R., Schwaemmle, V.

10.1101/2023.05.01.538996 — Posted: 2023-05-02 — Discussion: 2024-01-02 GigaScience

When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes

Cosma, B. M., Shirali Hossein Zade, R., Jordan, E. N., van Lent, P., Peng, C., Pillay, S., Abeel, T.

10.1101/2023.01.30.526229 — Posted: 2023-02-02 — Discussion: 2024-01-02 GigaScience

Finding the LMA needle in the wheat proteome haystack.

Vincent, D., Bui, A., Ram, D., Ezernieks, V., Shahinfar, S., Luke, T., Rochfort, S., Rigas, N., Panozzo, J., Daetwyler, H., Hayden, M. J.

10.1101/2023.01.22.525108 — Posted: 2023-01-23 — Discussion: 2024-01-02 GigaScience

Single-cell transcriptome analysis illuminating the characteristics of species-specific innate immune responses against viral infections

Aso, H., Ito, J., Ozaki, H., Kashima, Y., Suzuki, Y., Koyanagi, Y., Sato, K.

10.1101/2022.12.06.519403 — Posted: 2022-12-07 — Discussion: 2023-11-13 GigaScience

Computational prediction of human deep intronic variation

Barbosa, P., Savisaar, R., Carmo-Fonseca, M., Fonseca, A.

10.1101/2023.02.17.528928 — Posted: 2023-02-17 — Discussion: 2023-11-13 GigaScience

Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks

Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Pereira, G. d. S., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G. d. S., Oliveira, T. d. P., Ferreira, G. C., Garcia, A. A. F.

10.1101/2022.11.24.517847 — Posted: 2022-11-25 — Discussion: 2023-11-13 GigaScience

SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis

Akshay, A., Katoch, M., Abedi, M., Besic, M., Shekarchizadeh, N., Burkhard, F., Bigger-Allen, A., Adam, R., Monastyrskaya, K., Hashemi Gheinani, A.

10.1101/2023.06.28.533479 — Posted: 2023-06-28 — Discussion: 2023-11-13 GigaScience