bioRxiv/medRxiv TRiP Review Activity

442 Reviews — GigaScience — All Subjects

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Vulture: Cloud-enabled scalable mining of microbial reads in public scRNA-seq data
Chen, J., Yin, D., Wong, H. Y. H., Duan, X., Yu, K. H. O., Ho, J. W. K.
10.1101/2023.02.13.528411 — Posted: 2023-02-15 — Discussion: 2024-02-11  GigaScience
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
Niehues, A., de Visser, C., Hagenbeek, F. A., Kulkarni, P., Pool, R., Karu, N., Kindt, A. S. D., Singh, G., Vermeiren, R. R. J. M., Boomsma, D. I., van Dongen, J., 't Hoen, P. A. C., van Gool, A. J.
10.1101/2023.06.07.543986 — Posted: 2023-06-09 — Discussion: 2024-02-11  GigaScience
A high-quality pseudo-phased genome for Melaleuca quinquenervia shows allelic diversity of NLR-type resistance genes
Chen, S. H., Martino, A. M., Luo, Z., Schwessinger, B., Jones, A., Tolessa, T., Bragg, J. G., Tobias, P. A., Edwards, R. J.
10.1101/2023.04.27.538497 — Posted: 2023-04-28 — Discussion: 2024-01-22  GigaScience
Finding the LMA needle in the wheat proteome haystack.
Vincent, D., Bui, A., Ram, D., Ezernieks, V., Shahinfar, S., Luke, T., Rochfort, S., Rigas, N., Panozzo, J., Daetwyler, H., Hayden, M. J.
10.1101/2023.01.22.525108 — Posted: 2023-01-23 — Discussion: 2024-01-02  GigaScience
Variance Analysis of LC-MS Experimental Factors and Their Impact on Machine Learning
Rehfeldt, T. G., Krawczyk, K., Echers, S. G., Marcatili, P., Palczynski, P., Roettger, R., Schwaemmle, V.
10.1101/2023.05.01.538996 — Posted: 2023-05-02 — Discussion: 2024-01-02  GigaScience
When do longer reads matter? A benchmark of long read de novo assembly tools for eukaryotic genomes
Cosma, B. M., Shirali Hossein Zade, R., Jordan, E. N., van Lent, P., Peng, C., Pillay, S., Abeel, T.
10.1101/2023.01.30.526229 — Posted: 2023-02-02 — Discussion: 2024-01-02  GigaScience
Computational prediction of human deep intronic variation
Barbosa, P., Savisaar, R., Carmo-Fonseca, M., Fonseca, A.
10.1101/2023.02.17.528928 — Posted: 2023-02-17 — Discussion: 2023-11-13  GigaScience
Developing best practices for genotyping-by-sequencing analysis using linkage maps as benchmarks
Taniguti, C. H., Taniguti, L. M., Amadeu, R. R., Mollinari, M., Pereira, G. d. S., Riera-Lizarazu, O., Lau, J., Byrne, D., Gesteira, G. d. S., Oliveira, T. d. P., Ferreira, G. C., Garcia, A. A. F.
10.1101/2022.11.24.517847 — Posted: 2022-11-25 — Discussion: 2023-11-13  GigaScience
SpheroScan: A User-Friendly Deep Learning Tool for Spheroid Image Analysis
Akshay, A., Katoch, M., Abedi, M., Besic, M., Shekarchizadeh, N., Burkhard, F., Bigger-Allen, A., Adam, R., Monastyrskaya, K., Hashemi Gheinani, A.
10.1101/2023.06.28.533479 — Posted: 2023-06-28 — Discussion: 2023-11-13  GigaScience
cellsnake: a user-friendly tool for single cell RNA sequencing analysis
Umu, S. U., Rapp Vander-Elst, K., Karlsen, V. T., Chouliara, M., Baekkevold, E. S., Jahnsen, F. L., Domanska, D.
10.1101/2023.05.03.539204 — Posted: 2023-05-04 — Discussion: 2023-11-13  GigaScience

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