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406 Reviews — GigaScience — All Subjects

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Chromosome-level genome and the identification of sex chromosomes in Uloborus diversus
Miller, J., Zimin, A., Gordus, A. G.
10.1101/2022.06.14.495972 — Posted: 2022-06-16 — Discussion: 2023-03-04  GigaScience
Accurate and Fast Clade Assignment via Deep Learning and Frequency Chaos Game Representation
Avila Cartes, J., Anand, S., Ciccolella, S., Bonizzoni, P., Della Vedova, G.
10.1101/2022.06.13.495912 — Posted: 2022-06-13 — Discussion: 2023-03-04  GigaScience
scShapes: A statistical framework for identifying distribution shapes in single-cell RNA-sequencing data
Dharmaratne, M., Kulkarni, A. S., Taherian Fard, A., Mar, J. C.
10.1101/2022.02.13.480299 — Posted: 2022-02-15 — Discussion: 2023-03-04  GigaScience
A molecular phenotypic map of Malignant Pleural Mesothelioma
Di Genova, A., Mangiante, L., Sexton-Oates, A., Voegele, C., Fernandez-Cuesta, L., Alcala, N., Foll, M.
10.1101/2022.07.06.499003 — Posted: 2022-07-08 — Discussion: 2023-03-04  GigaScience
A Chromosome-level Assembly of the Japanese Eel Genome, Insights into Gene Duplication and Chromosomal Reorganization
WANG, H., WAN, H. T., WU, B., JIAN, J., NG, A. H., CHUNG, C. Y.-L., CHOW, E. Y.-C., ZHANG, J., WONG, A. O., LAI, K. P., CHAN, T. F., Zhang, E. L., WONG, C. K.-C.
10.1101/2022.06.28.497880 — Posted: 2022-07-01 — Discussion: 2023-03-04  GigaScience
xAtlas: Scalable small variant calling across heterogeneous next-generation sequencing experiments
Farek, J., Hughes, D., Mansfield, A., Krasheninina, O., Nasser, W., Sedlazeck, F. J., Khan, Z., Venner, E., Metcalf, G., Boerwinkle, E., Muzny, D. M., Gibbs, R. A., Salerno, W.
10.1101/295071 — Posted: 2018-04-05 — Discussion: 2023-03-04  GigaScience
Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples
Kang, K., Chong, H., Ning, K.
10.1101/2020.11.17.387811 — Posted: 2020-11-20 — Discussion: 2023-03-01  GigaScience
DeePVP: Identification and classification of phage virion protein using deep learning
Fang, Z., Feng, T., Zhou, H.
10.1101/2021.10.23.465539 — Posted: 2021-10-24 — Discussion: 2023-03-01  GigaScience
SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data
Zhang, Y., Wong, G., Mann, G., Muller, S., Yang, J. Y. H.
10.1101/2021.07.11.451967 — Posted: 2021-07-12 — Discussion: 2023-03-01  GigaScience
Stardust: improving spatial transcriptomics data analysis through space aware modularity optimization based clustering.
Avesani, S., Viesi, E., Alessandrì, L., Motterle, G., Bonnici, V., Beccuti, M., Calogero, R., Giugno, R.
10.1101/2022.04.27.489655 — Posted: 2022-04-28 — Discussion: 2023-03-01  GigaScience

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