bioRxiv/medRxiv TRiP Review Activity

428 Reviews — GigaScience — All Subjects

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FriendlyClearMap: An optimized toolkit for mouse brain mapping and analysis
Negwer, M., Bosch, B., Bormann, M., Hesen, R., Lütje, L., Aarts, L., Rossing, C., Nadif Kasri, N., Schubert, D.
10.1101/2023.02.16.528882 — Posted: 2023-02-18 — Discussion: 2023-06-19  GigaScience
TF-Prioritizer: a java pipeline to prioritize condition-specific transcription factors
Hoffmann, M., Trummer, N., Jankowski, J., Lee, H. K., Willruth, L.-L., Yuan, K., Lazareva, O., Baumgarten, N., Schmidt, F., Baumbach, J., Schulz, M. H., Blumenthal, D. B., Hennighausen, L., List, M.
10.1101/2022.10.19.512881 — Posted: 2022-10-21 — Discussion: 2023-06-19  GigaScience
The Regulatory Mendelian Mutation score for GRCh38
Nazaretyan, L., Kircher, M., Schubach, M.
10.1101/2022.03.14.484240 — Posted: 2022-03-15 — Discussion: 2023-05-02  GigaScience
DivBrowse - interactive visualization and exploratory data analysis of variant call matrices
König, P., Beier, S., Mascher, M., Stein, N., Lange, M., Scholz, U.
10.1101/2022.09.22.509016 — Posted: 2022-09-23 — Discussion: 2023-05-02  GigaScience
An accessible infrastructure for artificial intelligence using a docker-based Jupyterlab in Galaxy
Kumar, A., Cuccuru, G., Gruening, B., Backofen, R.
10.1101/2022.07.08.499333 — Posted: 2022-07-11 — Discussion: 2023-05-02  GigaScience
The GEN-ERA toolbox: unified and reproducible workflows for research in microbial genomics .
Cornet, L., Durieu, B., Baert, F., D'hooge, E., Colignon, D., Meunier, L., Lupo, V., Cleenwerck, I., Daniel, H.-M., Rigouts, L., Sirjacobs, D., Declerck, S., Vandamme, P., Wilmotte, A., Baurain, D., Becker, P.
10.1101/2022.10.20.513017 — Posted: 2022-10-21 — Discussion: 2023-05-02  GigaScience
Contamination detection and microbiome exploration with GRIMER
Piro, V. C., Renard, B. Y.
10.1101/2021.06.22.449360 — Posted: 2021-06-22 — Discussion: 2023-04-10  GigaScience
ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids
Sotcheff, S., Zhou, Y., Sun, Y., Johnson, J. E., Torbett, B., Routh, A. L.
10.1101/2022.03.12.484090 — Posted: 2022-03-13 — Discussion: 2023-04-10  GigaScience
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim
Yang, C., Lo, T., Nip, K. M., Hafezqorani, S., Warren, R. L., Birol, I.
10.1101/2021.11.19.469328 — Posted: 2021-11-20 — Discussion: 2023-04-10  GigaScience
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
Ballard, J. W. O., Field, M. A., Edwards, R. J., Wilson, L. A. B., Koungoulos, L. G., Rosen, B. R., Chernoff, B., Dudchenko, O., Omer, A., Keilwagen, J., Skvortsova, K., Bogdanovic, O., Chan, E., Zammit, R., Hayes, V., Aiden, E. L.
10.1101/2023.01.26.525801 — Posted: 2023-01-27 — Discussion: 2023-04-10  GigaScience

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