bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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Interpretable network-guided epistasis detection
Duroux, D., Climente-Gonzales, H., Azencott, C.-A., Van Steen, K.
10.1101/2020.09.24.310136 — Posted: 2020-09-25 — Discussion: 2022-03-14  GigaScience
Democratizing Data-Independent Acquisition Proteomics Analysis on Public Cloud Infrastructures Via The Galaxy Framework
Fahrner, M., Foell, M. C., Gruening, B., Bernt, M., Rost, H., Schilling, O.
10.1101/2021.07.21.453197 — Posted: 2021-07-22 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Sheffield, N. C., Stolarczyk, M., Reuter, V. P., Rendeiro, A.
10.1101/2020.10.08.331322 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.
Etherington, G. J., Soranzo, N., Mohammed, S., Haerty, W., Davey, R., Di-Palma, F.
10.1101/724047 — Posted: 2019-08-04 — Discussion: 2022-03-14  GigaScience
The Preprocessed Connectomes Project Repository of Manually Corrected Skull-stripped T1-weighted Anatomical MRI Data.
Benjamin Puccio, James P Pooley, John S Pellman, Elise C Taverna, Richard Cameron Craddock
10.1101/067017 — Posted: 2016-07-31 — Discussion: 2022-03-14  GigaScience
Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)
Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J.-M., Guerif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C.-E., Velasco, R., Neale, D. B., Chagne, D., Van de Peer, Y., Troggio, M., Bianco, L.
10.1101/651778 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
LED light gradient as a screening tool for light quality responses in model plant species
Lejeune, P., Fratamico, A., Bouche, F., Huerga-Fernandez, S., Tocquin, P., Perilleux, C.
10.1101/2020.10.08.320002 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
HOMINID: A framework for identifying associations between host genetic variation and microbiome composition
Lynch, J., Tang, K., Sands, J., Sands, M., Tang, E., Mukherjee, S., Knights, D., Blekhman, R.
10.1101/081323 — Posted: 2016-10-17 — Discussion: 2022-03-14  GigaScience

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