Channel:  4D Nucleome

473 Articles

Development and application of an uncapped mRNA platform
Zheng, X., Liu, B., Ni, P., Cai, L., Shi, X., Ke, Z., Zhang, S., Hu, B., Yang, B., Xu, Y., Long, W., Fang, Z., Wang, Y., Zhang, W., Xu, Y., Wang, Z., Pan, K., Zhou, K., Wang, H., Geng, H., Hu, H., Liu, B.
10.1101/2022.06.05.494796 — Posted: 2023-08-24
Tet-dependent 5-hydroxymethyl-Cytosine modification of mRNA regulates axon guidance genes in Drosophila
Singh, B. N., Tran, H., Kramer, J., Kirichenko, E., Changela, N., Wang, F., Feng, Y., Kumar, D., Tu, M., Lan, J., Bizet, M., Fuks, F., Steward, R.
10.1101/2023.01.03.522592 — Posted: 2023-08-04
ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
Gao, V. R., Yang, R., Das, A., Luo, R., Luo, H., McNally, D. R., Karagiannidis, I., Rivas, M. A., Wang, Z.-m., Barisic, D., Karbalayghareh, A., Wong, W., Zhan, Y., Chin, C. R., Noble, W. S., Bilmes, J. A., Apostolou, E., Kharas, M., Beguelin, W., Viny, A. D., Huangfu, D., Rudensky, A., Melnick, A., Leslie, C. S.
10.1101/2023.07.27.550836 — Posted: 2023-07-28
Multiscale modelling of chromatin 4D organization in SARS-CoV-2 infected cells
Chiariello, A. M., Abraham, A., Bianco, S., Esposito, A., Vercellone, F., Conte, M., Fontana, A., Nicodemi, M.
10.1101/2023.07.27.550709 — Posted: 2023-07-28
Concurrent profiling of multiscale 3D genome organization and gene expression in single mammalian cells
Zhou, T., Zhang, R., Jia, D., Doty, R. T., Munday, A. D., Gao, D., Xin, L., Abkowitz, J. L., Duan, Z., Ma, J.
10.1101/2023.07.20.549578 — Posted: 2023-07-25
Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum
Zhao, Z., Parra, O. P., Musella, F., Scrutton-Alvarado, N., Fujita, S.-i., Alber, F., Yang, Y., Yamada, T.
10.1101/2023.07.19.549737 — Posted: 2023-07-25
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression
Murphy, D., Salataj, E., Di Giammartino, D. C., Rodriguez-Hernaez, J., Kloetgen, A., Garg, V., Char, E., Uyehara, C. M., Ee, L.-s., Lee, U., Stadtfeld, M., Hadjantonakis, A.-K., Tsirigos, A., Polyzos, A., Apostolou, E.
10.1101/2023.07.19.549714 — Posted: 2023-07-19
High throughput PRIME editing screens identify functional DNA variants in the human genome
Ren, X., Yang, H., Nierenberg, J. L., Sun, Y., Chen, J., Beaman, C., Pham, T., Nobuhara, M., Takagi, M. A., Narayan, V., Li, Y., Ziv, E., Shen, Y.
10.1101/2023.07.12.548736 — Posted: 2023-07-12
Single cell susceptibility to SARS-CoV-2 infection is driven by variable cell states
Reffsin, S., Miller, J., Ayyanathan, K., Dunagin, M. C., Jain, N., Schultz, D. C., Cherry, S., Raj, A.
10.1101/2023.07.06.547955 — Posted: 2023-07-07
Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells
Pulecio, J., Tayyebi, Z., Liu, D., Wong, W., Luo, R., Damodaran, J. R., Kaplan, S., Cho, H., Yan, J., Murphy, D. J., Rickert, R., Shukla, A., Zhong, A., Gonzalez, F., Yang, D., Li, W., Zhou, T., Apostolou, E., Leslie, C., Huangfu, D.
10.1101/2023.06.14.544990 — Posted: 2023-06-14

RSS  Channel RSS