Channel:  4D Nucleome

473 Articles

Post-transcriptional splicing can occur in a slow-moving zone around the gene
Cote, A. J., O'Farrell, A., Dardani, I., Dunagin, M., Cote, C. J., Wan, Y., Bayatpour, S., Drexler, H. L., Alexander, K. A., Chen, F., Wassie, A. T., Patel, R., Pham, K., Boyden, E. S., Berger, S., Phillips-Cremins, J., Churchman, L. S., Raj, A.
10.1101/2020.04.06.028092 — Posted: 2023-11-13
SuPreMo: a computational tool for streamlining in silico perturbation using sequence-based predictive models
Gjoni, K., Pollard, K. S.
10.1101/2023.11.03.565556 — Posted: 2023-11-05
Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types
Kumar, P., Gholamalamdari, O., Zhang, Y., Zhang, L., Vertii, A., van Schaik, T., Peric-Hupkes, D., Sasaki, T., Gilbert, D. M., van Steensel, B., Ma, J., Kaufman, P. D., Belmont, A. S.
10.1101/2023.10.29.564613 — Posted: 2023-11-01
Exploring the Roles of RNAs in Chromatin Architecture Using Deep Learning
Kuang, S., Pollard, K. S.
10.1101/2023.10.22.563498 — Posted: 2023-10-24
Drug-Mediated Control of Receptor Valency Enhances Immune Cell Potency
Finn, P., Chavez, M., Chen, X., Wang, H., Rane, D. A., Gurjar, J., Qi, L. S.
10.1101/2023.01.04.522664 — Posted: 2023-10-22
Phase separation of Myc differentially regulates gene transcription
Yang, J., Chung, C.-I., Koach, J., Liu, H., Navalkar, A., Ma, Z., Zhao, Q., Yang, X., Mittag, T., Shen, Y., Weiss, W. A., Shu, X.
10.1101/2022.06.28.498043 — Posted: 2023-10-21
The H3.3 K36M oncohistone disrupts the establishment of epigenetic memory through loss of DNA methylation
Sinha, J., Nickels, J. F., Thurm, A. R., Ludwig, C. H., Archibald, B. N., Hinks, M. M., Wan, J., Fang, D., Bintu, L.
10.1101/2023.10.13.562147 — Posted: 2023-10-14
Single-cell chromatin state transitions during epigenetic memory formation
Fujimori, T., Rios-Martinez, C., Thurm, A. R., Hinks, M. M., Doughty, B. R., Sinha, J., Le, D., Hafner, A., Greenleaf, W. J., Boettiger, A. N., Bintu, L.
10.1101/2023.10.03.560616 — Posted: 2023-10-05
Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells
Calandrelli, R., Wen, X., Charles Richard, J. L., Luo, Z., Nguyen, T. C., Chen, C.-J., Qi, Z., Xue, S., Chen, W., Yan, Z., Wu, W., Zaleta-Rivera, K., Hu, R., Yu, M., Wang, Y., Li, W., Ma, J., Ren, B., Zhong, S.
10.1101/2021.06.10.447969 — Posted: 2023-09-08
Functional characterization of gene regulatory elements and neuropsychiatric disease-associated risk loci in iPSCs and iPSC-derived neurons
Yang, X., Jones, I. R., Chen, P. B., Yang, H., Ren, X., Zheng, L., Li, B., Li, Y. E., Sun, Q., Wen, J., Beaman, C., Cui, X., Li, Y., Wang, W., Hu, M., Ren, B., Shen, Y.
10.1101/2023.08.30.555359 — Posted: 2023-08-30

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