Channel:  4D Nucleome

473 Articles

Super-enhancer interactomes from single cells link clustering and transcription
Le, D., Hafner, A., Gaddam, S., Wang, K., Boettiger, A. N.
10.1101/2024.05.08.593251 — Posted: 2024-05-10
MASTR-seq: Multiplexed Analysis of Short Tandem Repeats with sequencing
Chandradoss, K. R., Su, C., Malachowski, T., Boya, R., Ryu, H.-S., Brennand, K., Phillips-Cremins, J. E.
10.1101/2024.04.29.591790 — Posted: 2024-05-02
Nanoscale cellular organization of viral RNA and proteins in SARS-CoV-2 replication organelles
Andronov, L., Han, M., Zhu, Y., Balaji, A., Roy, A. R., Barentine, A. E. S., Patel, P., Garhyan, J., Qi, L. S., Moerner, W. E.
10.1101/2023.11.07.566110 — Posted: 2024-04-01
Regulation of immune signal integration and memory by inflammation-induced chromosome conformation
Daniel, B., Chen, A. Y., Sandor, K., Zhang, W., Miao, Z., Lareau, C. A., Yost, K. E., Chang, H., Satpathy, A.
10.1101/2024.02.29.582872 — Posted: 2024-03-04
Single-cell multiplex chromatin and RNA interactions in aging human brain
Wen, X., Luo, Z., Zhao, W., Calandrelli, R., Nguyen, T., Wan, X., Richard, J. L. C., Zhong, S.
10.1101/2023.06.28.546457 — Posted: 2024-03-04
SUMO Promotes DNA Repair Protein Collaboration to Support Alterative Telomere Lengthening in the Absence of PML
Zhao, R., Xu, M., Wondisford, A. R., Lackner, R. M., Salsman, J., Dellaire, G., Chenoweth, D. M., O'Sullivan, R. J., Zhao, X., Zhang, H.
10.1101/2024.02.29.582813 — Posted: 2024-02-29
A multi-looping chromatin signature predicts dysregulated gene expression in neurons with familial Alzheimer's disease mutations
Chandrashekar, H., Simandi, Z., Choi, H., Ryu, H.-S., Waldman, A. J., Nikish, A., Muppidi, S. S., Gong, W., Paquet, D., Phillips-Cremins, J. E.
10.1101/2024.02.27.582395 — Posted: 2024-02-27
Induction and in silico staging of human gastruloids with neural tube, segmented somites & advanced cell types
Hamazaki, N., Yang, W., Kubo, C., Qiu, C., Martin, B. K., Garge, R. K., Regalado, S. G., Nichols, E., Lee, C., Daza, R. M., Srivatsan, S., Shendure, J.
10.1101/2024.02.10.579769 — Posted: 2024-02-12
HiCDiffusion - diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequences
Chilinski, M., Plewczynski, D.
10.1101/2024.02.01.578389 — Posted: 2024-02-05
Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis
Hildebrand, E. M., Polovnikov, K., Dekker, B., Liu, Y., Lafontaine, D. L., Fox, A. N., Li, Y., Venev, S. V., Mirny, L. A., Dekker, J.
10.1101/2022.10.15.511838 — Posted: 2024-01-30

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