Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

Formation of Chromosomal Domains by Loop Extrusion
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny
10.1101/024620 — Posted: 2016-03-15
ChromoTrace: Reconstruction of 3D Chromosome Configurations by Super-Resolution Microscopy
Barton, C., Morganella, S., Oedegaard, O., Alexander, S., Ries, J., Fitzgerald, T., Ellenberg, J., Birney, E.
10.1101/115436 — Posted: 2018-02-22
The dynamic three-dimensional organization of the diploid yeast genome
Kim, S., Liachko, I., Brickner, D. G., Cook, K., Noble, W. S., Brickner, J. H., Shendure, J., Dunham, M.
10.1101/091827 — Posted: 2016-12-05
Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells
Danko, C. G., Choate, L. A., Marks, B. A., Rice, E. J., Wang, Z., Chu, T., Martins, A. L., Dukler, N., Coonrod, S. A., Tait Wojno, E. D., Lis, J. T., Kraus, W. L., Siepel, A.
10.1101/083212 — Posted: 2017-07-16
HiGlass: Web-based Visual Exploration and Analysis of Genome Interaction Maps
Kerpedjiev, P., Abdennur, N., Lekschas, F., McCallum, C., Dinkla, K., Strobelt, H., Luber, J. M., Ouellette, S. B., Azhir, A., Kumar, N., Hwang, J., Lee, S., Alver, B. H., Pfister, H., Mirny, L. A., Park, P. J., Gehlenborg, N.
10.1101/121889 — Posted: 2018-06-04
HiPiler: Visual Exploration Of Large Genome Interaction Matrices With Interactive Small Multiples
Lekschas, F., Bach, B., Kerpedjiev, P., Gehlenborg, N., Pfister, H.
10.1101/123588 — Posted: 2017-07-09
A Versatile Compressed Sensing Scheme For Faster And Less Phototoxic 3D Fluorescence Microscopy
Woringer, M., Darzacq, X., Zimmer, C., Mir, M.
10.1101/125815 — Posted: 2017-04-10
Nuclear Microenvironments Modulate Transcription From Low-Affinity Enhancers
Crocker, J., Tsai, A., Muthusamy, A. K., Lavis, L. D., Singer, R. H., Stern, D. L.
10.1101/128280 — Posted: 2017-04-18
An Integrative Framework For Detecting Structural Variations In Cancer Genomes
Dixon, J., Xu, J., Dileep, V., Zhan, Y., Song, F., Le, V. T., Yardimci, G. G., Chakraborty, A., Bann, D. V., Wang, Y., Clark, R., Zhang, L., Yang, H., Liu, T., Iyyanki, S., An, L., Pool, C., Sasaki, T., Mulia, J. C. R., Ozadam, H., Lajoie, B. R., Kaul, R., Buckley, M., Lee, K., Diegel, M., Pezic, D., Ernst, C., Hadjur, S., Odom, D. T., Stamatoyannopoulos, J. A., Broach, J. R., Hardison, R., Ay, F., Noble, W. S., Dekker, J., Gilbert, D. M., Yue, F.
10.1101/119651 — Posted: 2017-03-28
A Comparison Between Single Cell RNA Sequencing And Single Molecule RNA FISH For Rare Cell Analysis
Torre, E. A., Dueck, H., Shaffer, S., Gospocic, J., Gupte, R., Bonasio, R., Kim, J., Murray, J., Raj, A.
10.1101/138289 — Posted: 2017-05-18

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