Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

Cell cycle dynamics of lamina associated DNA
van Schaik, T., Vos, M., Peric-Hupkes, D., van Steensel, B.
10.1101/2019.12.19.881979 — Posted: 2019-12-19
BAMM-SC: A Bayesian mixture model for clustering droplet-based single cell transcriptomic data from population studies
Sun, Z., Chen, L., Xin, H., Huang, Q., Cillo, A., Tabib, T., Ding, Y., Kolls, J., Bruno, T., Lafyatis, R., Vignali, D., Chen, K., Hu, M., Chen, W.
10.1101/392662 — Posted: 2018-08-16
GAMIBHEAR: whole-genome haplotype reconstruction from Genome Architecture Mapping data
Markowski, J., Kempfer, R., Kukalev, A., Irastorza-Azcarate, I., Loof, G., Kehr, B., Pombo, A., Rahmann, S., Schwarz, R. F.
10.1101/2020.01.30.927061 — Posted: 2021-02-21
An Improved 4'-Aminomethyltroxsalen-Based DNA Crosslinker for Biotinylation of DNA
Wielenberg, K., Wang, M., Yang, M., Ozer, A., Lis, J., Lin, H.
10.1101/2020.02.29.971317 — Posted: 2020-02-29
Condensin II inactivation in interphase does not affect chromatin folding or gene expression
Abdennur, N., Schwarzer, W., Pekowska, A., Shaltiel, I. A., Huber, W., Haering, C. H., Mirny, L., Spitz, F.
10.1101/437459 — Posted: 2018-10-07
Single-Cell Analysis of the 3D Topologies of Genomic Loci Using Genome Architecture Mapping
Welch, L. R., Baugher, C., Zhang, Y., Davis, T., Marzluff, W. F., Welch, J. D., Pombo, A.
10.1101/2020.02.10.941047 — Posted: 2020-02-13
SPIN reveals genome-wide landscape of nuclear compartmentalization
Wang, Y., Zhang, Y., Zhang, R., van Schaik, T., Zhang, L., Sasaki, T., Peric-Hupkes, D., Chen, Y., Gilbert, D. M., van Steensel, B., Belmont, A. S., Ma, J.
10.1101/2020.03.09.982967 — Posted: 2020-03-10
Cell-type specialization in the brain is encoded by specific long-range chromatin topologies
Winick-Ng, W., Kukalev, A., Harabula, I., Zea Redondo, L., Szabo, D., Meijer, M., Serebreni, L., Zhang, Y., Bianco, S., Chiariello, A. M., Irastorza Azcarate, I., Fiorillo, L., Musella, F., Thieme, C. J., Irani, E., Torlai Triglia, E., Kolodziejczyk, A. A., Abentung, A., Apostolova, G., Paul, E. J., Franke, V., Kempfer, R., Akalin, A., Teichmann, S. A., Dechant, G., Ungless, M. A., Nicodemi, M., Welch, L., Castelo-Branco, G., Pombo, A.
10.1101/2020.04.02.020990 — Posted: 2021-05-12
Comparison of the Hi-C, GAM and SPRITE methods by use of polymer models of chromatin
Fiorillo, L., Musella, F., Kempfer, R., Chiariello, A. M., Bianco, S., Kukalev, A., Irastorza-Azcarate, I., Esposito, A., Conte, M., Prisco, A., Pombo, A., Nicodemi, M.
10.1101/2020.04.24.059915 — Posted: 2020-04-25
CTCF Promotes Long-range Enhancer-promoter Interactions and Lineage-specific Gene Expression in Mammalian Cells
Kubo, N., Ishii, H., Xiong, X., Bianco, S., Meitinger, F., Hu, R., Hocker, J. D., Conte, M., Gorkin, D., Yu, M., Li, B., Dixon, J., Hu, M., Nicodemi, M., Zhao, H., Ren, B.
10.1101/2020.03.21.001693 — Posted: 2020-03-23

RSS  Channel RSS