Channel:  4D Nucleome

474 Articles

Population-based structure modeling reveals key roles of nuclear microenvironment in gene functions
Yildirim, A., Hua, N., Boninsegna, L., Polles, G., Gong, K., Hao, S., Li, W., Zhou, X. J., Alber, F.
10.1101/2021.07.11.451976 — Posted: 2022-02-14
Quantitative fate mapping: Reconstructing progenitor field dynamics via retrospective lineage barcoding
Fang, W., Bell, C. M., Sapirstein, A., Asami, S., Leeper, K., Zack, D. J., Ji, H., Kalhor, R.
10.1101/2022.02.13.480215 — Posted: 2022-02-14
Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes and gene regulation
Choudhary, M. N., Quaid, K., Xing, X., Schmidt, H., Wang, T.
10.1101/2022.02.01.475239 — Posted: 2022-02-03
Exploring genomic data coupled with 3D chromatin structures using the WashU Epigenome Browser
Li, D., Purushotham, D., Harrison, J. K., Wang, T.
10.1101/2022.01.18.476849 — Posted: 2022-01-21
Massively parallel genomic perturbations with multi-target CRISPR reveal new insights on Cas9 activity and DNA damage responses at endogenous sites
Zou, R. S., Marin-Gonzalez, A., Liu, Y., Liu, H. B., Shen, L., Dveirin, R., Luo, J. X. J., Kalhor, R., Ha, T.
10.1101/2022.01.18.476836 — Posted: 2022-01-20
Multi-color super-resolution imaging to study human coronavirus RNA during cellular infection
Wang, J., Han, M., Roy, A. R., Wang, H., Moeckl, L., Zeng, L., Moerner, W. E., Qi, L. S.
10.1101/2021.06.09.447760 — Posted: 2022-01-13
Kinetic principles underlying pioneer function of GAGA transcription factor in live cells
Tang, X., Li, T., Liu, S., Wisniewski, J., Zheng, Q., Lavis, L., Rong, Y., Wu, C.
10.1101/2021.10.21.465351 — Posted: 2022-01-07
Reliance of neuronal gene expression on cohesin scales with chromatin loop length
Calderon, L., Weiss, F. D., Beagan, J. A., Oliveira, M. S., Wang, Y.-F., Carroll, T., Dharmalingam, G., Gong, W., Tossell, K., de Paola, V., Whilding, C., Ungless, M. A., Fisher, A. G., Phillips-Cremins, J. E., Merkenschlager, M.
10.1101/2021.02.24.432639 — Posted: 2022-01-02
Divergent clonal differentiation trajectories of T cell exhaustion
Daniel, B., Yost, K. E., Sandor, K., Xia, Y., Qi, Y., Hiam-Galvez, K. J., Meier, S. L., Belk, J., Giles, J. R., Wherry, E. J., Chang, H., Egawa, T., Satpathy, A.
10.1101/2021.12.16.472900 — Posted: 2021-12-17
Single-fiber nucleosome density shapes the regulatory output of a mammalian chromatin remodeling enzyme
Abdulhay, N. J., Hsieh, L. J., McNally, C. P., Ketavarapu, M., Kasinathan, S., Nanda, A. S., Ostrowski, M. S., Wu, K., Moore, C. M., Goodarzi, H., Narlikar, G. J., Ramani, V.
10.1101/2021.12.10.472156 — Posted: 2021-12-11

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