Channel:  4D Nucleome

474 Articles

In silico discovery of repetitive elements as key sequence determinants of 3D genome folding
Gunsalus, L. M., Keiser, M. J., Pollard, K. S.
10.1101/2022.08.11.503410 — Posted: 2022-08-12
Loop stacking organizes genome folding from TADs to chromosomes
Hafner, A., Park, M., Berger, S. E., Nora, E., Boettiger, A. N.
10.1101/2022.07.13.499982 — Posted: 2022-07-29
Maf Family Transcription Factors are Required for Nutrient Uptake in the Neonatal Gut
Bara, A. M., Chen, L., Ma, C., Underwood, J., Moreci, R. S., Sumigray, K., Sun, T., Diao, Y., Verzi, M., Lechler, T.
10.1101/2022.07.26.501624 — Posted: 2022-07-28
The dynseq genome browser track enables visualization of context-specific, dynamic DNA sequence features at single nucleotide resolution
Nair, S., Barrett, A., Li, D., Raney, B. J., Lee, B. T., Kerpedjiev, P., Ramalingam, V., Pampari, A., Lekschas, F., Wang, T., Haeussler, M., Kundaje, A.
10.1101/2022.05.26.493621 — Posted: 2022-05-31
Nucleoli and the nucleoli-centromere association are dynamic during normal development and in cancer
Rodrigues, A., MacQuarrie, K. L., Freeman, E., Willis, A. B., Xu, Z., Alvarez, A. A., Ma, Y., Perez White, B. E., Foltz, D. R., Huang, S.
10.1101/2022.05.21.492846 — Posted: 2022-05-21
The association of MEG3 lncRNA with nuclear speckles in living cells
Hasenson, S., Alkalay, E., Atrash, M. K., Boocholez, A., Gershbaum, J., Hochberg-Laufer, H., Shav-Tal, Y.
10.1101/2022.05.11.491451 — Posted: 2022-05-11
A unique epigenomic landscape defines CD8+ tissue-resident memory T cells
Buquicchio, F. A., Fonseca, R., Belk, J. A., Evrard, M., Obers, A., Qi, Y., Daniel, B., Yost, K. E., Satpathy, A. T., Mackay, L. K.
10.1101/2022.05.04.490680 — Posted: 2022-05-06
Multi-scale phase separation by explosive percolation with single chromatin loop resolution
Sengupta, K., Denkiewicz, M., Chilinski, M., Szczepinska, T., Mollah, A. F., Korsak, S., D'Souza, R., Ruan, Y., Plewczynski, D.
10.1101/2022.04.28.489670 — Posted: 2022-04-29
CONCERT: Genome-wide prediction of sequence elements that modulate DNA replication timing
Yang, Y., Wang, Y., Zhang, Y., Ma, J.
10.1101/2022.04.21.488684 — Posted: 2022-04-22
Genome-wide CRISPR screens of T cell exhaustion identify chromatin remodeling factors that limit T cell persistence
Belk, J., Yao, W., Ly, N., Freitas, K., Chen, Y.-T., Shi, Q., Valencia, A., Shifrut, E., Kale, N., Yost, K., Duffy, C., Hwee, M., Miao, Z., Ashworth, A., Mackall, C., Marson, A., Carnevale, J., Vardhana, S., Satpathy, A.
10.1101/2022.04.20.488974 — Posted: 2022-04-21

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