Channel: 4D Nucleome

474 Articles

Boundary stacking interactions enable cross-TAD enhancer-promoter communication during limb development

Hung, T.-C., Kingsley, D. M., Boettiger, A. N.

10.1101/2023.02.06.527380 — Posted: 2023-02-06

Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER

Attar, S., Browning, V. E., Liu, Y., Nichols, E. K., Tsue, A. F., Shechner, D. M., Shendure, J., Lieberman, J. A., Akilesh, S., Beliveau, B. J.

10.1101/2023.01.30.526264 — Posted: 2023-02-01

Deep learning enables fast, gentle STED microscopy

Ebrahimi, V., Stephan, T., Kim, J., Carravilla, P., Eggeling, C., Jakobs, S., Han, K. Y.

10.1101/2023.01.26.525571 — Posted: 2023-01-27

3D genome organization around nuclear speckles drives mRNA splicing efficiency

Bhat, P., Chow, A., Emert, B., Ettlin, O., Quinodoz, S. A., Takei, Y., Huang, W., Blanco, M. R., Guttman, M.

10.1101/2023.01.04.522632 — Posted: 2023-01-04

Improving the sensitivity of in vivo CRISPR off-target detection with DISCOVER-Seq+

Zou, R. S., Liu, Y., Reyes Gaido, O. E., Konig, M. F., Mog, B. J., Shen, L. L., Aviles-Vazquez, F., Marin-Gonzalez, A., Ha, T.

10.1101/2022.10.29.514376 — Posted: 2022-10-30

Structural elements facilitate extreme long-range gene regulation at a human disease locus

Chen, L.-F., Long, H. K., Park, M., Swigut, T., Boettiger, A. N., Wysocka, J.

10.1101/2022.10.20.513057 — Posted: 2022-10-21

Remodeling and compaction of the inactive X is regulated by Xist during female B cell activation

Anguera, M., Sierra, I., Nguyen, S. C., Barnett, R. J., Cook, A., Ryu, H.-S., Beethem, Z., Phillips-Cremins, J. E., Joyce, E. F.

10.1101/2022.10.19.512821 — Posted: 2022-10-21

Polycomb repression of Hox genes involves spatial feedback but not domain compaction or demixing

Murphy, S. E., Boettiger, A.

10.1101/2022.10.14.512199 — Posted: 2022-10-14

Identification of a self-renewing muscle satellite cell state by single-cell chromatin accessibility profiling

Okafor, A. E., Lin, X., Situ, C., Wei, X., Wei, X., Wu, Z., Diao, Y.

10.1101/2022.09.16.508339 — Posted: 2022-09-17

Crosstalk between RNA m6A and DNA methylation regulates transposable element chromatin activation and cell fate in human pluripotent stem cells

Sun, T., Xu, Y., Xiang, Y., Soderblom, E. J., Diao, Y.

10.1101/2022.09.08.507172 — Posted: 2022-09-12