Channel: 4D Nucleome

484 Articles

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Improved CUT&RUN chromatin profiling and analysis tools

Meers, M. P., Bryson, T. D., Henikoff, S.

10.1101/569129 — Posted: 2019-05-16

Spatial genome re-organization between fetal and adult hematopoietic stem cells

Chen, C., Yu, W., Tober, J., Gao, P., He, B., Lee, K., Trieu, T., Blobel, G., Speck, N., Tan, K.

10.1101/628214 — Posted: 2019-05-05

Photoactivation of silicon rhodamines via a light-induced protonation

Frei, M. S., Hoess, P., Lampe, M., Nijmeijer, B., Kueblbeck, M., Ellenberg, J., Ries, J., Pitsch, S., Reymond, L., Johnsson, K.

10.1101/626853 — Posted: 2019-05-04

Super resolution imaging of a distinct chromatin loop in human lymphoblastoid cells

Ruan, Y., Plewczynski, D., Zhu, J. J., Parteka, Z., Lee, B., Szalaj, P., Wang, P., Jodkowska, K., Arron, J., Chew, T. L.

10.1101/621920 — Posted: 2019-04-29

Tibanna: software for scalable execution of portable pipelines on the cloud

Lee, S., Johnson, J., Vitzthum, C., Kırlı, K., Alver, B. H., Park, P. J.

10.1101/440974 — Posted: 2019-04-29

ChIA-DropBox: a novel analysis and visualization pipeline for multiplex chromatin interactions

Tian, S. Z., Capurso, D., Kim, M., Lee, B., Zheng, M., Ruan, Y.

10.1101/613034 — Posted: 2019-04-18

Re-configuration of Chromatin Structure During the Mitosis-G1 Phase Transition

Zhang, H., Emerson, D., Gilgenast, T., Titus, K., Lan, Y., Huang, P., Zhang, D., Wang, H., Keller, C., Giardine, B., Hardison, R., Phillips-Cremins, J., Blobel, G.

10.1101/604355 — Posted: 2019-04-11

Multi-scale deep tensor factorization learns a latent representation of the human epigenome

Schreiber, J., Durham, T. J., Bilmes, J., Noble, W. S.

10.1101/364976 — Posted: 2019-04-11

RNA polymerases as moving barriers to condensin loop extrusion

Brandao, H. B., Wang, X., Paul, P., van den Berg, A., Rudner, D. Z., Mirny, L. A.

10.1101/604280 — Posted: 2019-04-10

Transcription amplification by nuclear speckle association

Kim, J., Khanna, N., Belmont, A. S.

10.1101/604298 — Posted: 2019-04-09