Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

152 Articles

Integrated Single Cell Atlas of Endothelial Cells of the Human Lung
Schupp, J. C., Adams, T. S., Cosme, C., Brickman Raredon, M. S., Omote, N., Poli, S., Rose, K.-A., Manning, E., Sauler, M., DeIuliis, G., Ahangari, F., Neumark, N., Yuan, Y., Habermann, A. C., Gutierrez, A. J., Bui, L. T., Meyer, K. B., Nawijn, M. C., Teichmann, S. A., Banovich, N., Kropski, J. A., Niklason, L. E., Pe'er, D., Yan, X., Homer, R., Rosas, I. O., Kaminski, N.
10.1101/2020.10.21.347914 — Posted: 2020-10-22
Poised cell circuits in human skin are activated in disease
Reynolds, G., Vegh, P., Fletcher, J., Poyner, E., Stephenson, E., Goh, I., Botting, R., Huang, N., Olabi, B., Dubois, A., Dixon, D., Green, K., Maunder, D., Engelbert, J., Efremova, M., Polanski, K., Jardine, L., Jones, C., Ness, T., Horsfall, D., McGrath, J., Carey, C., Popescu, D.-M., Webb, S., Wang, X.-n., Sayer, B., Park, J.-E., Negri, V., Belokhvostova, D., Lynch, M., McDonald, D., Filby, A., Hagai, T., Meyer, K., Husain, A., Coxhead, J., Vento-Tormo, R., Behjati, S., Lisgo, S., Villani, A.-C., Bacardit, J., Jones, P., OToole, E., Ogg, G., Rajan, N., Reynolds, N., Teichmann, S., Watt, F.
10.1101/2020.11.05.369363 — Posted: 2020-11-05
Cell segmentation-free inference of cell types from in situ transcriptomics data
Park, J., Choi, W., Tiesmeyer, S., Long, B., Borm, L. E., Garren, E., Nguyen, T. N., Tasic, B., Codeluppi, S., Graf, T., Schlesner, M., Stegle, O., Eils, R., Ishaque, N.
10.1101/800748 — Posted: 2020-11-28
Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro
Garcia-Alonso, L., Handfield, L.-F., Roberts, K., Nikolakopoulou, K., Fernando, R. C., Gardner, L., Woodhams, B., Arutyunyan, A., Polanski, K., Hoo, R., Sancho-Serra, C., Li, T., Kwakwa, K., Tuck, E., Kleshchevnikov, V., Tarkowska, A., Porter, T., Mazzeo, C. I., van Dongen, S., Dabrowska, M., Vaskivskyi, V., Mahbubani, K. T., PARK, J.-E., Jimenez-Linan, M., Campos, L., Kiselev, V., Lindskog, C., Ayuk, P., Prigmore, E., Stratton, M. R., Saeb-Parsy, K., Moffett, A., Moore, L., Bayraktar, O. A., Teichmann, S. A., Turco, M. Y., Vento-Tormo, R.
10.1101/2021.01.02.425073 — Posted: 2021-01-04
Robust clustering and interpretation ofscRNA-seq data using reference componentanalysis
Schmidt, F., Ranjan, B., Xiao Xuan Lin, Q., Krishnan, V., Joanito, I., Honardoost, M. A., Nawaz, Z., Venkatesh, P. N., Tan, J., Rayan, N. A., Ong, S. T., Prabhakar, S.
10.1101/2021.02.16.431527 — Posted: 2021-02-17
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2
Delorey, T. M., Ziegler, C. G. K., Heimberg, G., Normand, R., Yang, Y., Segerstolpe, A., Abbondanza, D., Fleming, S. J., Subramanian, A., Montoro, D. T., Jagadeesh, K. A., Dey, K., Sen, P., Slyper, M., Pita-Juarez, Y., Phillips, D., Bloom-Ackermann, Z., Barkas, N., Ganna, A., Gomez, J., Normandin, E., Naderi, P., Popov, Y. V., Raju, S. S., Niezen, S., Tsai, L. T.- Y., Siddle, K. J., Sud, M., Tran, V. M., Karuthedath Vellarikkal, S., Amir-Zilberstein, L., Atri, D. S., Beechem, J. M., Brook, O. R., Chen, J., Divakar, P., Dorceus, P., Engreitz, J. M., Essene, A., Fitzgerald, D. M., Fropf, R., Gaz
10.1101/2021.02.25.430130 — Posted: 2021-02-25
DUBStepR: correlation-based feature selection for clustering single-cell RNA sequencing data
Ranjan, B., Sun, W., Park, J., Mishra, K., Xie, R., Alipour, F., Singhal, V., Schmidt, F., Joanito, I., Arul Rayan, N., Gek Liang Lim, M., Prabhakar, S.
10.1101/2020.10.07.330563 — Posted: 2021-03-05
Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps
Park, J., Foox, J., Hether, T., Danko, D., Warren, S., Kim, Y., Reeves, J., Butler, D. J., Mozsary, C., Rosiene, J., Shaiber, A., Afshinnekoo, E., MacKay, M., Bram, Y., Chandar, V., Geiger, H., Craney, A., Velu, P., Melnick, A. M., Hajirasouliha, I., Beheshti, A., Taylor, D., Saravia-Butler, A., Singh, U., Wurtele, E. S., Schisler, J., Fenessey, S., Corvelo, A., Zody, M. C., Germer, S., Salvatore, S., Levy, S., Wu, S., Tatonetti, N., Shapira, S., Salvatore, M., Loda, M., Westblade, L. F., Cushing, M., Rennert, H., Kriegel, A. J., Elemento, O., Imielinski, M., Borczuk, A. C., Meydan, C., Schwar
10.1101/2021.03.08.434433 — Posted: 2021-03-09
Cells of the human intestinal tract mapped across space and time
Elmentaite, R., Kumasaka, N., King, H. W., Roberts, K., Dabrowska, M., Pritchard, S., Bolt, L., Vieira, S. F., Mamanova, L., Huang, N., Goh Kai'En, I., Stephenson, E., Engelbert, J., Botting, R. A., Fleming, A., Dann, E., Lisgo, S. N., Katan, M., Leonard, S., Oliver, T. R., Hook, L., Nayak, K., Perrone, F., Campos, L. S., Dominguez Conde, C., Polanski, K., van Dongen, S., Patel, M., Morgan, M., Marioni, J., Bayraktar, O., Meyer, K. B., Zilbauer, M., Uhlig, H., Clatworthy, M. R., Mahbubani, K. T., Saeb-Parsy, K., Haniffa, M. A., James, K. R., Teichmann, S. A.
10.1101/2021.04.07.438755 — Posted: 2021-04-07
Single-cell atlas of human oral mucosa reveals a stromal-neutrophil axis regulating tissue immunity in health and inflammatory disease
Williams, D. W., Greenwell-Wild, T., Brenchley, L., Dutzan, N., Overmiller, A., Sawaya, A. P., Webb, S., Martin, D., Hajishengallis, G., Divaris, K., Morasso, M., Haniffa, M., Moutsopoulos, N. M.
10.1101/2021.04.06.438702 — Posted: 2021-04-07

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