Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

152 Articles

Cells and gene expression programs in the adult human heart
Litvinukova, M., Talavera-Lopez, C., Maatz, H., Reichart, D., Worth, C. L., Lindberg, E. L., Kanda, M., Polanski, K., Fasouli, E. S., Samari, S., Roberts, K., Tuck, E., Heinig, M., DeLaughter, D., McDonough, B., Wakimoto, H., Gorham, J. M., Nadelmann, E., Mahbubani, K. T., Saeb-Parsy, K., Patone, G., Boyle, J. J., Zhang, H., Zhang, H., Viveiros, A., Oudit, G., Bayraktar, O., Seidman, J. G., Seidman, C., Noseda, M., Hubner, N., Teichmann, S. A.
10.1101/2020.04.03.024075 — Posted: 2020-04-10
Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and highlights inflammatory programs in putative target cells
Muus, C., Luecken, M. D., Eraslan, G., Waghray, A., Heimberg, G., Sikkema, L., Kobayashi, Y., Vaishnav, E. D., Subramanian, A., Smillie, C., Jagadeesh, K., Duong, E. T., Fiskin, E., Torlai Triglia, E., Becavin, C., Ansari, M., Cai, P., Lin, B., Buchanan, J., Chen, S., Shu, J., Haber, A. L., Chung, H., Montoro, D. T., Adams, T., Aliee, H., Allon, S. J., Andrusivova, Z., Angelidis, I., Ashenberg, O., Bassler, K., Becavin, C., Benhar, I., Bergenstrahle, J., Bergenstrahle, L., Bolt, L., Braun, E., Bui, L. T., Chaffin, M., Chichelnitskiy, E., Chiou, J., Conlon, T. M., Cuoco, M. S., Deprez, M., Fisc
10.1101/2020.04.19.049254 — Posted: 2020-04-21
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing data
Ranjan, B., Schmidt, F., Sun, W., Park, J., Honardoost, M. A., Tan, J., Arul Rayan, N., Prabhakar, S.
10.1101/2020.04.22.056473 — Posted: 2020-04-24
Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19
Han, L., Wei, X., Liu, C., Volpe, G., Wang, Z., Pan, T., Yuan, Y., Lei, Y., Lai, Y., Ward, C., Yu, Y., Wang, M., Shi, Q., Wu, T., Wu, L., Liu, Y., Wang, C., Zhang, Y., Sun, H., Yu, H., Zhuang, Z., Tang, T., Huang, Y., Lu, H., Xu, L., Xu, J., Cheng, M., Liu, Y., Wong, C. W., Tan, T., Ji, W., Maxwell, P. H., Yang, H., Wang, J., Zhu, S., Liu, S., Xu, X., Hou, Y., Esteban, M. A., Liu, L.
10.1101/2020.04.10.022103 — Posted: 2020-04-24
Single nucleus and in situ RNA sequencing reveals cell topographies in the human pancreas
Tosti, L., Hang, Y., Debnath, O., Tiesmeyer, S., Trefzer, T., Steiger, K., Ten, F. W., Lukassen, S., Ballke, S., Kuehl, A. A., Spieckermann, S., Bottino, R., Ishaque, N., Weichert, W., Kim, S. K., Eils, R., Conrad, C.
10.1101/733964 — Posted: 2020-05-03
Single nucleus multi-omics regulatory atlas of the murine pituitary
Ruf-Zamojski, F. M., Zhang, Z., Zamojski, M., Smith, G. R., Mendelev, N., Liu, H., Nudelman, G., Moriwaki, M., Pincas, H., Gomez Castanon, R., Nair, V. D., Seenarine, N., Amper, M. A. S., Zhou, X., Ongaro, L., Toufaily, C., Schang, G., Nery, J. R., Bartlett, A., Aldridge, A., Jain, N., Childs, G. V., Troyanskaya, O. G., Ecker, J. R., Turgeon, J. L., Welt, C. K., Bernard, D. J., Sealfon, S. C.
10.1101/2020.06.06.138024 — Posted: 2020-06-11
Spatial and single-cell transcriptional landscape of human cerebellar development
Aldinger, K. A., Thomson, Z., Haldipur, P., Deng, M., Timms, A. E., Hirano, M., Santpere, G., Roco, C., Rosenberg, A. B., Lorente-Galdos, B., Gulden, F. O., O'Day, D., Overman, L. M., Lisgo, S., Alexandre, P., Sestan, N., Doherty, D., Dobyns, W. B., Seelig, G., Glass, I. A., Millen, K. J.
10.1101/2020.06.30.174391 — Posted: 2020-07-01
A single cell atlas of human cornea that defines its development, limbal stem and progenitor cells and the interactions with the limbal niche
Joseph Collin, Rachel Queen, Darin Zerti, Sanja Bojic, Nicky Moyse, Marina Moya-Molina, Chunbo Yang, Gary Reynolds, Rafiqul Hussain, Jonathan M Coxhead, Steven Lisgo, Deborah Henderson, Agatha Joseph, Paul Rooney, Saurabh Ghosh, Che Connon, Muzlifah Haniffa, Francisco Figueiredo, Lyle Armstrong, Majlinda Lako
10.1101/2020.07.09.195438 — Posted: 2020-07-10
Besca, a single-cell transcriptomics analysis toolkit to accelerate translational research
Maedler, S. C., Julien-Laferriere, A., Wyss, L., Phan, M., Kang, A. S. W., Ulrich, E., Schmucki, R., Zhang, J. D., Ebeling, M., Badi, L., Kam-Thong, T., Schwalie, P. C., Hatje, K.
10.1101/2020.08.11.245795 — Posted: 2020-09-01
Deep learning and alignment of spatially-resolved whole transcriptomes of single cells in the mouse brain with Tangram
Biancalani, T., Scalia, G., Buffoni, L., Avasthi, R., Lu, Z., Sanger, A., Tokcan, N., Vanderburg, C. R., Segerstolpe, A., Zhang, M., Avraham-Davidi, I., Vickovic, S., Nitzan, M., Ma, S., Buenrostro, J. D., Brown, N. B., Fanelli, D., Zhuang, X., Macosko, E., Regev, A.
10.1101/2020.08.29.272831 — Posted: 2020-09-24

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