Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

141 Articles

High throughput, error corrected Nanopore single cell transcriptome sequencing
Lebrigand, K., Magnone, V., BARBRY, P., Waldmann, R.
10.1101/831495 — Posted: 2019-11-05
Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces
Ding, J., Regev, A.
10.1101/853457 — Posted: 2019-11-25
Distinct microbial and immune niches of the human colon
James, K. R., Gomes, T., Elmentaite, R., Kumar, N., Gulliver, E. L., King, H. W., Stares, M. D., Bareham, B. R., Ferdinand, J. R., Petrova, V., Polanski, K., Forster, S. C., Jarvis, L. B., Suchanek, O., Howlett, S., James, L., Jones, J. L., Meyer, K. B., Clatworthy, M. R., Saeb-Parsy, K., Lawley, T., Teichmann, S. A.
10.1101/2019.12.12.871657 — Posted: 2019-12-12
A single-cell atlas of the human healthy airways
Deprez, M., Zaragosi, L.-E., Truchi, M., Ruiz Garcia, S., Arguel, M.-J., Lebrigand, K., Paquet, A., Pee'r, D., Marquette, C.-H., Leroy, S., BARBRY, P.
10.1101/2019.12.21.884759 — Posted: 2019-12-23
Sampling artifacts in single-cell genomics cohort studies
Massoni-Badosa, R., Iacono, G., Moutinho, C., Kulis, M., Palau, N., Marchese, D., Rodriguez-Ubreva, J., Ballestar, E., Rodriguez-Esteban, G., Marsal, S., Aymerich, M., Colomer, D., Campo, E., Jula, A., Martin-Subero, J. I., Heyn, H.
10.1101/2020.01.15.897066 — Posted: 2020-01-15
A cell atlas of human thymic development defines T cell repertoire formation
Park, J.-E., Botting, R. A., Dominguez Conde, C., Popescu, D.-M., Lavaert, M., Kunz, D. J., Stephenson, E., Ragazzini, R., Tuck, E., Wilbrey-Clark, A. L., Ferdinand, J. R., Webb, S., Maunder, D., Vandamme, N., Mahbubani, K. T., Polanski, K., Mamanova, L., Fuller, A., Filby, A., Reynolds, G., Dixon, D., Saeb-Parsy, K., Lisgo, S., Henderson, D., Vento-Tormo, R., Meyer, K. B., Saeys, Y., Bonfanti, P., Behjati, S., Clatworthy, M. R., Taghon, T., Haniffa, M., Teichmann, S. A.
10.1101/2020.01.28.911115 — Posted: 2020-01-28
Single-cell sequencing of developing human gut reveals transcriptional links to childhood Crohns disease
Elmentaite, R., Ross, A., James, K. R., Ortmann, D., Gomes, T., Roberts, K., Nayak, K., Tuck, L., Bayraktar, O., Heuschkel, R., Vallier, L., Teichmann, S. A., Zilbauer, M.
10.1101/2020.02.06.937110 — Posted: 2020-02-07
A single-cell and single-nucleus RNA-seq toolbox for fresh and frozen human tumors
Slyper, M., Porter, C. B. M., Ashenberg, O., Waldman, J., Drokhlyansky, E., Wakiro, I., Smillie, C., Smith-Rosario, G., Wu, J., Dionne, D., Vigneau, S., Jane-Valbuena, J., Napolitano, S., Su, M.-J., Patel, A. G., Karlstrom, A., Gritsch, S., Nomura, M., Waghray, A., Gohil, S. H., Tsankov, A. M., Jerby-Arnon, L., Cohen, O., Klughammer, J., Rosen, Y., Gould, J., Li, B., Nguyen, L., Wu, C. J., Izar, B., Haq, R., Hodi, F. S., Yoon, C. H., Hata, A. N., Baker, S. J., Suva, M. L., Bueno, R., Stover, E. H., Matulonis, U. A., Clay, M. R., Dyer, M. A., Collins, N. B., Wagle, N., Rotem, A., Johnson, B. E.
10.1101/761429 — Posted: 2020-03-30
SARS-CoV-2 receptor ACE2 and TMPRSS2 are predominantly expressed in a transient secretory cell type in subsegmental bronchial branches
Lukassen, S., Chua, R. L., Trefzer, T., Kahn, N. C., Schneider, M. A., Muley, T., Winter, H., Meister, M., Veith, C., Boots, A. W., Hennig, B. P., Kreuter, M., Conrad, C., Eils, R.
10.1101/2020.03.13.991455 — Posted: 2020-03-30
Single cell profiling of immature human postnatal thymocytes resolves the complexity of intra-thymic lineage differentiation and thymus seeding precursors.
Lavaert, M., Liang, K. L., Vandamme, N., Park, J.-E., Roels, J., Kowalczyk, M. S., Li, B., Ashenberg, O., Tabaka, M., Dionne, D., Tickle, T. L., Slyper, M., Rozenblatt-Rosen, O., Vandekerckhove, B., Leclercq, G., Regev, A., Van Vlierberghe, P., Guilliams, M., Teichmann, S. A., Saeys, Y., Taghon, T.
10.1101/2020.04.07.007237 — Posted: 2020-04-08

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