Channel:  Human Cell Atlas

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

152 Articles

scSemiProfiler: Advancing Large-scale Single-cell Studiesthrough Semi-profiling with Deep Generative Models andActive Learning
Wang, J., Fonseca, G. J., Ding, J.
10.1101/2023.11.20.567929 — Posted: 2023-11-21
A deep lung cell atlas reveals cytokine-mediated lineage switching of a rare cell progenitor of the human airway epithelium
Waghray, A., Monga, I., Lin, B., Shah, V., Slyper, M., Giotti, B., Xu, J., Waldman, J., Dionne, D., Nguyen, L. T., Lou, W., Cai, P., Park, E., Muus, C., Sun, J., Surve, M. V., Yang, L. C. C., Rozenblatt-Rosen, O., Dolerey, T. M., Saladi, S. V., Tsankov, A. M., Regev, A., Rajagopal, J.
10.1101/2023.11.28.569028 — Posted: 2023-11-29
Early human lung immune cell development and its role in epithelial cell fate
Barnes, J. L., He, P., Yoshida, M., Worlock, K. B., Lindeboom, R. G. H., Suo, C., Pett, J. P., Wilbrey-Clark, A., Dann, E., Mamanova, L., Richardson, L., Oliver, A. J., Pennycuick, A. L., Allen-Hyttinen, J., Herczeg, I. T., Hynds, R. E., Teixeira, V. H., Haniffa, M., Lim, K., Sun, D., Rawlins, E. L., Polanski, K., Lyons, P. A., Marioni, J. C., Tuong, Z. K., Clatworthy, M. R., Reading, J. L., Janes, S. M., Teichmann, S., Meyer, K. B., Nikolic, M. Z.
10.1101/2022.12.13.519713 — Posted: 2022-12-15
Automatic cell type harmonization and integration across Human Cell Atlas datasets
Xu, C., Prete, M., Webb, S., Jardine, L., Stewart, B., Hoo, R., He, P., Meyer, K. B., Teichmann, S.
10.1101/2023.05.01.538994 — Posted: 2023-10-17
Human skeletal muscle ageing atlas
Kedlian, V. R., Wang, Y., Liu, T., Chen, X., Bolt, L., Shen, Z., Fasouli, E. S., Prigmore, E., Kleshchevnikov, V., Li, T., Lawrence, J. E., Huang, N., Guo, Q., Yang, L., Polanski, K., Dabrowska, M., Tudor, C., Li, X., Bayraktar, O. A., Patel, M., Meyer, K. B., Kumasaka, N., Mahbubani, K. T., Xiang, A. P., Saeb-Parsy, K., Teichmann, S. A., Zhang, H.
10.1101/2022.05.24.493094 — Posted: 2022-05-25
A single-cell atlas of transcribed cis-regulatory elements in the human genome
Moody, J., Kouno, T., Kojima, M., Koya, I., Leon, J., Suzuki, A., Hasegawa, A., Akiyama, T., Akiyama, N., Amagai, M., Chang, J.-C., Fukushima-Nomura, A., Handa, M., Hino, K., Hino, M., Hirata, T., Imai, Y., Inoue, K., Kawasaki, H., Kimura, T., Kinoshita, T., Kubo, K.-i., Kunii, Y., Lopez-Redondo, F., Manabe, R.-i., Miyai, T., Morimoto, S., Nagaoka, A., Nakajima, J., Noma, S., Okazaki, Y., Ozaki, K., Saeki, N., Sakai, H., Seyama, K., Shibayama, Y., Sujino, T., Tagami, M., Takahashi, H., Takao, M., Takeshita, M., Takiuchi, T., Terao, C., Yip, C. W., Yoshinaga, S., Okano, H., Yamamoto, K., Kasuka
10.1101/2023.11.13.566791 — Posted: 2023-11-14
WebAtlas pipeline for integrated single cell and spatial transcriptomic data
Li, T., Horsfall, D., Basurto-Lozada, D., Roberts, K., Prete, M., Lawrence, J. E. G., He, P., Tuck, E., Moore, J., Ghazanfar, S., Teichmann, S., Haniffa, M., Bayraktar, O. A.
10.1101/2023.05.19.541329 — Posted: 2023-05-22
Single cell-guided prenatal derivation of primary epithelial organoids from the human amniotic and tracheal fluids.
Gerli, M. F. M., Cala, G., Beesley, M. A., Sina, B., Tullie, L., Panariello, F., Michielin, F., Sun, K. Y., Davidson, J. R., Russo, F. M., Jones, B. C., Lee, D., Savvidis, S., Xenakis, T., Simcock, I. C., Straatman-Iwanowska, A. A., Hirst, R. A., David, A. L., O'Callaghan, C., Olivo, A., Eaton, S., Loukogeorgakis, S. P., Cacchiarelli, D., Deprest, J., Li, V. S., Giobbe, G. G., De Coppi, P.
10.1101/2023.05.31.539801 — Posted: 2023-06-01
Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution
Watson, B., Paul, B., Amir-Zilberstein, L., Segerstolpe, A., Rahman, R., Shih, A., Deguine, J., Xavier, R., Moffitt, J. R., Mullen, A. C.
10.1101/2024.02.02.578633 — Posted: 2024-02-07
Single nucleus and spatial transcriptomic profiling of human healthy hamstring tendon
Mimpen, J. Y., Ramos-Mucci, L. D., Paul, C., Kurjan, A., Hulley, P., Ikwuanusi, C., Gwilym, S., Baldwin, M. J., Cribbs, A. P., Snelling, S. J. B.
10.1101/2022.12.19.521110 — Posted: 2022-12-20

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