Channel:  4D Nucleome

484 Articles

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HiCDiffusion - diffusion-enhanced, transformer-based prediction of chromatin interactions from DNA sequences
Chilinski, M., Plewczynski, D.
10.1101/2024.02.01.578389 — Posted: 2024-02-05
Mitotic chromosomes are self-entangled and disentangle through a Topoisomerase II-dependent two stage exit from mitosis
Hildebrand, E. M., Polovnikov, K., Dekker, B., Liu, Y., Lafontaine, D. L., Fox, A. N., Li, Y., Venev, S. V., Mirny, L. A., Dekker, J.
10.1101/2022.10.15.511838 — Posted: 2024-01-30
Pseudotime analysis for time-series single-cell sequencing and imaging data
Li, G., Kim, H.-J., Pendyala, S., Zhang, R., Disteche, C. M., Vert, J.-P., Deng, X., Fowler, D. M., Noble, W. S.
10.1101/2023.11.03.565575 — Posted: 2024-01-26
Rapid and reversible dissolution of biomolecular condensates using light-controlled recruitment of a solubility tag
Brumbaugh-Reed, E. H., Aoki, K., Toettcher, J. E.
10.1101/2024.01.16.575860 — Posted: 2024-01-17
LoopSage: An Energy-Based Monte Carlo approach for the Loop Extrusion Modelling of Chromatin
Korsak, S., Plewczynski, D.
10.1101/2024.01.10.574968 — Posted: 2024-01-12
Machine learning reveals the diversity of human 3D chromatin contact patterns
Gilbertson, E. N., Brand, C. M., McArthur, E., Rinker, D. C., Kuang, S., Pollard, K. S., Capra, J. A.
10.1101/2023.12.22.573104 — Posted: 2023-12-23
ChIP-DIP: A multiplexed method for mapping hundreds of proteins to DNA uncovers diverse regulatory elements controlling gene expression
Perez, A. A., Goronzy, I. N., Blanco, M. R., Guo, J. K., Guttman, M.
10.1101/2023.12.14.571730 — Posted: 2023-12-18
Electrostatic encoding of genome organization principles within single native nucleosomes
Park, S., Athreya, A., Carrizo, G., Benning, N., Mitchener, M., Bhanu, N., Garcia, B., Zhang, B., Muir, T. W., Pearce, E., Ha, T.
10.1101/2023.12.08.570828 — Posted: 2023-12-09
Understanding how genetically encoded tags affect phase separation by Heterochromatin Protein HP1α
Zhou, Z., Narlikar, G. J.
10.1101/2023.12.04.569983 — Posted: 2023-12-05
Cell type-specific loops linked to RNA polymerase II elongation in human neural differentiation
Titus, K. R., Simandi, Z., Chandrashekar, H., Paquet, D., Phillips-Cremins, J. E.
10.1101/2023.12.04.569731 — Posted: 2023-12-05

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