Channel:  4D Nucleome

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

426 Articles

Unsupervised manifold alignment for single-cell multi-omics data
Singh, R., Demetci, P., Bonora, G., Ramani, V., Lee, C., Fang, H., Duan, Z., Deng, X., Shendure, J., Disteche, C., Noble, W. S.
10.1101/2020.06.13.149195 — Posted: 2020-06-15
Responsiveness to perturbations is a hallmark of transcription factors that maintain cell identity
Mellis, I. A., Edelstein, H. I., Truitt, R., Beck, L. E., Symmons, O., Goyal, Y., Dunagin, M. C., Linares Saldana, R. A., Shah, P. P., Yang, W., Jain, R., Raj, A.
10.1101/2020.06.11.147207 — Posted: 2020-06-30
Chromatin Mechanics Dictates Subdiffusion and Coarsening Dynamics of Embedded Condensates
Lee, D. S. W., Wingreen, N. S., Brangwynne, C. P.
10.1101/2020.06.03.128561 — Posted: 2020-06-04
Gromov-Wasserstein optimal transport to align single-cell multi-omics data
Demetci, P., Santorella, R., Sandstede, B., Noble, W. S., Singh, R.
10.1101/2020.04.28.066787 — Posted: 2020-11-11
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
Hui Huang, Quan Zhu, Adam Jussila, Yuanyuan Han, Bogdan Bintu, Colin Kern, Mattia Conte, Yanxiao Zhang, Simona Bianco, Andrea Chiariello, Miao Yu, Rong Hu, Ivan Juric, Ming Hu, Mario Nicodemi, Xiaowei Zhuang, Bing Ren
10.1101/2020.07.07.192526 — Posted: 2020-07-08
PartSeg, a Tool for Quantitative Feature Extraction From 3D Microscopy Images for Dummies
Bokota, G., Sroka, J., Basu, S., Das, N., Trzaskoma, P., Yushkevich, Y., Grabowska, A., Magalska, A., Plewczynski, D.
10.1101/2020.07.16.206789 — Posted: 2020-07-17
Simultaneous Epigenetic Perturbation and Genome Imaging Reveal Distinct Roles of H3K9me3 in Chromatin Architecture and Transcription
Feng, Y., Wang, Y., Wang, X., He, X., Yang, C., Naseri, A., Pederson, T., Zheng, J., Zhang, S., Xiao, X., Xie, W., Ma, H.
10.1101/2020.07.15.204719 — Posted: 2020-07-16
Multiplex-GAM: genome-wide identification of chromatin contacts yields insights not captured by Hi-C
Beagrie, R. A., Thieme, C. J., Annunziatella, C., Baugher, C., Zhang, Y., Schueler, M., Chiariello, A. M., Bianco, S., Kukalev, A., Li, Y., Kempfer, R., Scialdone, A., Welch, L. A., Nicodemi, M., Pombo, A.
10.1101/2020.07.31.230284 — Posted: 2021-03-08
A single-cell method to map higher-order 3D genome organization in thousands of individual cells reveals structural heterogeneity in mouse ES cells
Arrastia, M. V., Jachowicz, J. W., Ollikainen, N., Curtis, M. S., Lai, C., Quinodoz, S., Selck, D. A., Guttman, M., Ismagilov, R. F.
10.1101/2020.08.11.242081 — Posted: 2020-08-12
RNA promotes the formation of spatial compartments in the nucleus
Quinodoz, S. A., Bhat, P., Ollikainen, N., Jachowicz, J. W., Banerjee, A. K., Chovanec, P., Blanco, M. R., Chow, A., Markaki, Y., Plath, K., Guttman, M.
10.1101/2020.08.25.267435 — Posted: 2020-08-25

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