Channel:  4D Nucleome

476 Articles

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Ultrastructural Visualization of 3D Chromatin Folding Using Serial Block-Face Scanning Electron Microscopy and In Situ Hybridization (3D-EMISH)
Trzaskoma, P., Ruszczycki, B., Lee, B., Pels, K. K., Krawczyk, K., Bokota, G., Szczepankiewicz, A. A., Aaron, J., Walczak, A., Sliwinska, M., Magalska, A., Kadloff, M., Wolny, A., Parteka, Z., Arabasz, S., Kiss- Arabasz, M., Plewczynski, D., Ruan, Y., Wilczynski, G. M.
10.1101/2020.02.05.935106 — Posted: 2020-02-06
Probing multi-way chromatin interaction with hypergraph representation learning
Zhang, R., Ma, J.
10.1101/2020.01.22.916171 — Posted: 2020-01-23
Memory sequencing reveals heritable single cell gene expression programs associated with distinct cellular behaviors
Shaffer, S. M., Emert, B. L., Reyes-Hueros, R., Cote, C., Harmange, G., Sizemore, A. E., Gupte, R., Torre, E., Singh, A., Bassett, D. S., Raj, A.
10.1101/379016 — Posted: 2019-12-21
Cell cycle dynamics of lamina associated DNA
van Schaik, T., Vos, M., Peric-Hupkes, D., van Steensel, B.
10.1101/2019.12.19.881979 — Posted: 2019-12-19
Chromosomal-level genome assembly of the scimitar-horned oryx: insights into diversity and demography of a species extinct in the wild
Humble, E., Dobrynin, P., Senn, H., Chuven, J., Scott, A. F., Mohr, D. W., Dudchenko, O., Omer, A. D., Colaric, Z., Lieberman Aiden, E., Wildt, D., Oliagi, S., Tamazian, G., Pukazhenthi, B., Ogden, R., Koepfli, K.-P.
10.1101/867341 — Posted: 2019-12-08
Efficient Homology-directed Repair with Circular ssDNA Donors
Iyer, S., Mir, A., Ibraheim, R., Lee, J., VegaBadillo, J., Roscoe, B., Zhu, L. J., Liu, P., Luk, K., Mintzer, E., de Brito, J. S., Zamore, P., Sontheimer, E. J., Wolfe, S.
10.1101/864199 — Posted: 2019-12-05
High-Resolution 3D Fluorescent Imaging of Intact Tissues
El-Nachef, D., Martinson, A. M., Yang, X., Murry, C. E., MacLellan, W. R.
10.1101/855254 — Posted: 2019-11-26
Capturing cell type-specific chromatin structural patterns by applying topic modeling to single-cell Hi-C data
Kim, H.-J., Yardimici, G. G., Bonora, G., Ramani, V., Liu, J., Qiu, R., Lee, C., Hesson, J., Ware, C. B., Shendure, J., Duan, Z., Noble, W. S.
10.1101/534800 — Posted: 2019-11-18
Genetic screening for single-cell variability modulators driving therapy resistance
Torre, E. A., Arai, E., Bayatpour, S., Beck, L. E., Emert, B. L., Shaffer, S. M., Mellis, I. A., Fane, M., Alicea, G., Budinich, K. A., Weeraratna, A., Shi, J., Raj, A.
10.1101/638809 — Posted: 2019-11-10
MS2-TRIBE evaluates protein-RNA interactions and nuclear organization of transcription by RNA editing
Biswas, J., Rahman, R., Gupta, V., Rosbash, M., Singer, R.
10.1101/829606 — Posted: 2019-11-04

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