Channel:  Impact of Genomic Variation on Function (IGVF)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

107 Articles

Interface-guided phenotyping of coding variants in the transcription factor RUNX1 with SEUSS
Ozturk, K., Panwala, R., Sheen, J., Ford, K., Payne, N., Zhang, D.-E., Hutter, S., Haferlach, T., Ideker, T., Mali, P., Carter, H.
10.1101/2023.08.03.551876 — Posted: 2023-08-04
ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
Gao, V. R., Yang, R., Das, A., Luo, R., Luo, H., McNally, D. R., Karagiannidis, I., Rivas, M. A., Wang, Z.-m., Barisic, D., Karbalayghareh, A., Wong, W., Zhan, Y., Chin, C. R., Noble, W. S., Bilmes, J. A., Apostolou, E., Kharas, M., Beguelin, W., Viny, A. D., Huangfu, D., Rudensky, A., Melnick, A., Leslie, C. S.
10.1101/2023.07.27.550836 — Posted: 2023-07-28
A machine-readable specification for genomics assays
Booeshaghi, A. S., Chen, X., Pachter, L.
10.1101/2023.03.17.533215 — Posted: 2023-07-18
Integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell types
Dincer, T. U., Ernst, J.
10.1101/2023.07.14.549056 — Posted: 2023-07-15
Proximity Analysis of Native Proteomes Reveals Interactomes Predictive of Phenotypic Modifiers of Autism and Related Neurodevelopmental Conditions
Gao, Y., Trn, M., Shonai, D., Zhao, J., Soderblom, E. J., Garcia-moreno, S. A., Gersbach, C. A., Wetsel, W. C., Dawson, G., Velmeshev, D., Jiang, Y.-h., Sloofman, L. G., Buxbaum, J., Soderling, S. H.
10.1101/2022.10.06.511211 — Posted: 2023-06-23
Integrating Image and Molecular Profiles for Spatial Transcriptomics Analysis
Jiang, X., Wang, S., Guo, L., Wen, Z., Jia, L., Xu, L., Xiao, G., Li, Q.
10.1101/2023.06.18.545488 — Posted: 2023-06-20
Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells
Pulecio, J., Tayyebi, Z., Liu, D., Wong, W., Luo, R., Damodaran, J. R., Kaplan, S., Cho, H., Yan, J., Murphy, D. J., Rickert, R., Shukla, A., Zhong, A., Gonzalez, F., Yang, D., Li, W., Zhou, T., Apostolou, E., Leslie, C., Huangfu, D.
10.1101/2023.06.14.544990 — Posted: 2023-06-14
Studying stochastic systems biology of the cell with single-cell genomics data
Gorin, G., Vastola, J. J., Pachter, L.
10.1101/2023.05.17.541250 — Posted: 2023-05-29
The epigenomic landscape of single vascular cells reflects developmental origin and identifies disease risk loci
Weldy, C. S., Cheng, P. P., Gu, W., Pedroza, A. J., Dalal, A. R., Worssam, M. D., Sharma, D., Nguyen, T., Kundu, R. K., Fischbein, M. P., Quertermous, T.
10.1101/2022.05.18.492517 — Posted: 2023-05-25
Characterizing glucokinase variant mechanisms using a multiplexed abundance assay
Gersing, S., Schulze, T. K., Cagiada, M., Stein, A., Roth, F. P., Lindorff-Larsen, K., Hartmann-Petersen, R.
10.1101/2023.05.24.542036 — Posted: 2023-05-24

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