Channel:  Impact of Genomic Variation on Function (IGVF)

232 Articles

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A gene regulatory element modulates myosin expression and controls cardiomyocyte response to stress
Anglen, T., Kaplow, I. M., Choi, B., Dewars, E., Perelli, R. M., Hagy, K. T., Tran, D., Ramaker, M. E., Shah, S., Jung, I., Landstrom, A. P., Karra, R., Diao, Y., Gersbach, C. A.
10.1101/2025.07.19.665672 — Posted: 2025-07-20
Genome-wide annotation of gene regulatory elements linked to cell fitness
ter Weele, M., Klann, T. S., Barrera, A., Ettyreddy, A. R., Liu, S., Rickels, R. A., Bryois, J., Jiang, S., Adkar, S. S., Iglesias, N., Sullivan, P. F., Reddy, T. E., Allen, A. S., Crawford, G. E., Gersbach, C.
10.1101/2021.03.08.434470 — Posted: 2025-07-20
Comprehensively Testing the Function of Missense Variation in the STK11 Tumour Suppressor
Zimmerman, D., Cote, A., van Loggerenberg, W., Gebbia, M., Kishore, N., Weile, J., Li, R., Reno, C., Marsh, A., Hernandez, F., Shahagadkar, P., Grove, L., Meier, S., Wu, H.-J., Fengolia, S., Ahronian, L., Teng, T., Waters, A. J., Seward, D., Taipale, M., Aronson, M., Richardson, M. E., Adams, D., Roth, F.
10.1101/2025.07.14.664734 — Posted: 2025-07-18
scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution
Hingerl, J. C., Martens, L. D., Karollus, A., Manz, T., Buenrostro, J. D., Theis, F. J., Gagneur, J.
10.1101/2024.09.19.613754 — Posted: 2025-07-16
Expanding the DNA Motif Lexicon of the Transcriptional Regulatory Code
Fan, J., Chaudhri, V. K., Bisht, D., Pease, N. A., Hall, D. R., Gerges, P., Yi, V. F., Kales, S., Ho, C.-H., Das, J., Ray, J. P., Tewhey, R., Meyer, C. A., Sahni, N., Singh, H.
10.1101/2025.07.09.662874 — Posted: 2025-07-15
Simultaneous epigenomic profiling and regulatory activity measurement using e2MPRA
Zhang, Z., Georgakopoulos Soares, I., Bourque, G., Ahituv, N., Inoue, F.
10.1101/2025.06.26.661849 — Posted: 2025-06-30
Cell cycle-coupled transcriptional network orchestrates human B cell fate bifurcation
Pease, N. A., Fan, J., Keshari, S., Stratton, J., Gerges, P., Ann Varghese, B., Nampoothiri VP, N., McGinnnis, C. S., Zhang, W., Gierlack, S. B., Swaminathan, T., Sachan, A., Manakkat Vijay, G., Mena Hernandez, L., Heidari Rarani, Z., Macedo, C., Metes, D., Satpathy, A. T., Jain, A. K., Sahni, N., Stallaert, W., Das, J., Singh, H.
10.1101/2025.04.23.649973 — Posted: 2025-06-25
Smooth muscle expression of RNA editing enzyme ADAR1 controls activation of RNA sensor MDA5 in atherosclerosis
Weldy, C. S., Li, Q., Monteiro, J. P., Peters, T. S., Guo, H., Galls, D., Gu, W., Cheng, P. P., Ramste, M., Li, D. Y., Palmisano, B. T., Sharma, D., Worssam, M. D., Zhao, Q., Bhate, A., Kundu, R., Nguyen, T., Mokry, M., Miller, C. L., van der Laan, S. W., Li, J. B., Quertermous, T.
10.1101/2024.07.08.602569 — Posted: 2025-06-25
Characterization of spatial homogeneous regions in tissues with concordex
Jackson, K. C., Booeshaghi, A. S., Galvez-Merchan, A., Moses, L., Chari, T., Kim, A., Hosten-Mittermaier, O., Pachter, L.
10.1101/2023.06.28.546949 — Posted: 2025-06-19
Capture-C MPRA: A high-throughput method to simultaneously characterize promoter interactions and regulatory activity
Arnould, C., Keukeleire, P., Inoue, F., Cui, X., An, K., Murray, E., Zhang, X., Drmanac, R., Peters, B., Shendure, J., Shen, Y., Kircher, M., Ahituv, N.
10.1101/2025.06.11.658967 — Posted: 2025-06-14

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