Channel:  Impact of Genomic Variation on Function (IGVF)

bioRxiv posts many COVID19-related papers. A reminder: they have not been formally peer-reviewed and should not guide health-related behavior or be reported in the press as conclusive.

120 Articles

Genomics 2 Proteins portal: A resource and discovery tool for linking genetic screening outputs to protein sequences and structures
Kwon, S., Safer, J., Nguyen, D. T., Hoksza, D., May, P., Arbesfeld, J., Rubin, A. F., Campbell, A. J., Burgin, A., Iqbal, S.
10.1101/2024.01.02.573913 — Posted: 2024-01-02
Rewriting regulatory DNA to dissect and reprogram gene expression
Martyn, G. E., Montgomery, M. T., Jones, H., Guo, K., Doughty, B. R., Linder, J., Chen, Z., Cochran, K., Lawrence, K. A., Munson, G., Pampari, A., Fulco, C. P., Kelley, D. R., Lander, E. S., Kundaje, A., Engreitz, J. M.
10.1101/2023.12.20.572268 — Posted: 2023-12-21
Flexible parsing, interpretation, and editing of technical sequences with splitcode
Sullivan, D. K., Pachter, L.
10.1101/2023.03.20.533521 — Posted: 2023-12-09
Reconstructing Spatial Transcriptomics at the Single-cell Resolution with BayesDeep
Jiang, X., Dong, L., Wang, S., Wen, Z., Chen, M., Xu, L., Xiao, G., Li, Q.
10.1101/2023.12.07.570715 — Posted: 2023-12-08
Pacybara: Accurate long-read sequencing for barcoded mutagenized allelic libraries
Weile, J., Ferra, G., Boyle, G., Pendyala, S., Amorosi, C., Yeh, C.-L., Cote, A. G., Kishore, N., Tabet, D., van Loggerenberg, W., Rayhan, A., Fowler, D. M., Dunham, M. J., Roth, F. P.
10.1101/2023.02.22.529427 — Posted: 2023-12-07
Decoding Heterogenous Single-cell Perturbation Responses
Song, B., Liu, D., Dai, W., McMyn, N., Wang, Q., Yang, D., Krejci, A., Vasilyev, A., Untermoser, N., Loregger, A., Song, D., Williams, B., Rosen, B., Cheng, X., Chao, L., Kale, H. T., Zhang, H., Diao, Y., Bürckstümmer, T., Siliciano, J. M., Li, J. J., Siliciano, R., Huangfu, D., Li, W.
10.1101/2023.10.30.564796 — Posted: 2023-11-29
MPRAbase: A Massively Parallel Reporter Assay Database
Zhao, J., Baltoumas, F. A., Konnaris, M. A., Mouratidis, I., Liu, Z., Sims, J., Agarwal, V., Pavlopoulos, G. A., Georgakopoulos-Soares, I., Ahituv, N.
10.1101/2023.11.19.567742 — Posted: 2023-11-22
Enhancer regulatory networks globally connect non-coding breast cancer loci to cancer genes
Wang, Y., Armendariz, D. A., Wang, L., Zhao, H., Xie, S., Hon, G. C.
10.1101/2023.11.20.567880 — Posted: 2023-11-20
Identifying genetic variants that influence the abundance of cell states in single-cell data
Rumker, L., Sakaue, S., Reshef, Y., Kang, J. B., Yazar, S., Alquicira-Hernandez, J., Valencia, C., Lagattuta, K. A., Mah-Som, A., Nathan, A., Powell, J. E., Loh, P.-R., Raychaudhuri, S.
10.1101/2023.11.13.566919 — Posted: 2023-11-15
An encyclopedia of enhancer-gene regulatory interactions in the human genome
Gschwind, A. R., Mualim, K. S., Karbalayghareh, A., Sheth, M. U., Dey, K. K., Jagoda, E., Nurtdinov, R. N., Xi, W., Tan, A. S., Jones, H., Ma, X. R., Yao, D., Nasser, J., Avsec, Z., James, B. T., Shamim, M. S., Durand, N. C., Rao, S. S. P., Mahajan, R., Doughty, B. R., Andreeva, K., Ulirsch, J. C., Fan, K., Perez, E. M., Nguyen, T. C., Kelley, D. R., Finucane, H. K., Moore, J. E., Weng, Z., Kellis, M., Bassik, M. C., Price, A. L., Beer, M. A., Guigo, R., Stamatoyannopoulos, J. A., Aiden, E. L., Greenleaf, W. J., Leslie, C. S., Steinmetz, L. M., Kundaje, A., Engreitz, J. M.
10.1101/2023.11.09.563812 — Posted: 2023-11-13

RSS  Channel RSS