bioRxiv/medRxiv TRiP Review Activity

373 Reviews — GigaScience — All Subjects

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The Regulatory Mendelian Mutation score for GRCh38
Nazaretyan, L., Kircher, M., Schubach, M.
10.1101/2022.03.14.484240 — Posted: 2022-03-15 — Discussion: 2023-05-02  GigaScience
ViReMa: A Virus Recombination Mapper of Next-Generation Sequencing data characterizes diverse recombinant viral nucleic acids
Sotcheff, S., Zhou, Y., Sun, Y., Johnson, J. E., Torbett, B., Routh, A. L.
10.1101/2022.03.12.484090 — Posted: 2022-03-13 — Discussion: 2023-04-10  GigaScience
Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim
Yang, C., Lo, T., Nip, K. M., Hafezqorani, S., Warren, R. L., Birol, I.
10.1101/2021.11.19.469328 — Posted: 2021-11-20 — Discussion: 2023-04-10  GigaScience
The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology
Ballard, J. W. O., Field, M. A., Edwards, R. J., Wilson, L. A. B., Koungoulos, L. G., Rosen, B. R., Chernoff, B., Dudchenko, O., Omer, A., Keilwagen, J., Skvortsova, K., Bogdanovic, O., Chan, E., Zammit, R., Hayes, V., Aiden, E. L.
10.1101/2023.01.26.525801 — Posted: 2023-01-27 — Discussion: 2023-04-10  GigaScience
Contamination detection and microbiome exploration with GRIMER
Piro, V. C., Renard, B. Y.
10.1101/2021.06.22.449360 — Posted: 2021-06-22 — Discussion: 2023-04-10  GigaScience
FAIR Data Station for Lightweight Metadata Management & Validation of Omics Studies
Nijsse, B., Schaap, P. J., Koehorst, J. J.
10.1101/2022.08.03.502622 — Posted: 2022-08-05 — Discussion: 2023-04-10  GigaScience
Cell type-specific interpretation of noncoding variants using deep learning-based methods
Sindeeva, M., Chekanov, N., Avetisian, M., Baranov, N., Malkin, E., Lapin, A., Kardymon, O., Fishman, V.
10.1101/2021.12.31.474623 — Posted: 2022-01-01 — Discussion: 2023-04-10  GigaScience
Defining the Characteristics of Type I Interferon Stimulated Genes: Insight from Expression Data and Machine Learning
Chai, H., Hughes, J., Gu, Q., Robertson, D. L.
10.1101/2021.10.08.463622 — Posted: 2021-10-09 — Discussion: 2023-03-24  GigaScience
3D-Beacons: Decreasing the gap between protein sequences and structures through a federated network of protein structure data resources
Varadi, M., Nair, S. S., Sillitoe, I., Tauriello, G., Anyango, S., Bienert, S., Borges, C., Deshpande, M., Green, T., Hatos, A., Hegedus, T., Hekkelman, M. L., Joosten, R., Jumper, J., Laydon, A., Molodenskiy, D., Piovesan, D., Salladini, E., Salzberg, S. L., Sommer, M. J., Steinegger, M., Suhajda, E., Svergun, D., Tenorio-Ku, L., Tosatto, S., Tunyasuvunakool, K., Waterhouse, A. M., Zidek, A., Hassabis, D., Schwede, T., Orengo, C., Velankar, S.
10.1101/2022.08.01.501973 — Posted: 2022-08-03 — Discussion: 2023-03-24  GigaScience
Whole-genome sequencing of Chinese native goat offers biological insights into cashmere fiber formation
Han, H., Yang, M.-M., Jiang, D., Zhang, X.-J., Wei, Q., Chen, T., Wang, Q.-J., Yang, C.-Y., Wulan, B., Zhang, T.-T., Gang, G., Mengke, D., LI, B., Deng, W.-D., Miao, Z.-P., Wang, R., Zhang, Q.-F., Li, L., CHao, S.-Y., Fang, M., Li, Y.
10.1101/2021.11.06.467539 — Posted: 2021-11-06 — Discussion: 2023-03-24  GigaScience

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