bioRxiv/medRxiv TRiP Review Activity

248 Reviews — GigaScience — Bioinformatics

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Analysis-ready VCF at Biobank scale using Zarr
Czech, E. A., Millar, T. R., White, T. E., Jeffery, B., Miles, A., Tallman, S., Wojdyla, R., Zabad, S., Hammerbacher, J., Kelleher, J.
10.1101/2024.06.11.598241 — Posted: 2024-06-12 — Discussion: 2025-07-08  GigaScience
CODARFE: Unlocking the prediction of continuous environmental variables based on microbiome
Barbosa, M. C., da Silva, J. F. M., Alves, L. C., Finn, R. D., Paschoal, A. R.
10.1101/2024.07.18.604052 — Posted: 2024-07-19 — Discussion: 2025-07-08  GigaScience
External validation of machine learning models - registered models and adaptive sample splitting
Gallitto, G., Englert, R., Kincses, B., Kotikalapudi, R., Li, J., Bingel, U., Spisak, T.
10.1101/2023.12.01.569626 — Posted: 2023-12-04 — Discussion: 2025-06-03  GigaScience
Spatial Integration of Multi-Omics Data using the novel Multi-Omics Imaging Integration Toolset
Wess, M., Andersen, M. K., Midtbust, E., Guillem, J. C. C., Viset, T., Storkersen, O., Krossa, S., Rye, M., Tessem, M.-B.
10.1101/2024.06.11.598306 — Posted: 2024-06-12 — Discussion: 2025-06-03  GigaScience
Defining the limits of plant chemical space: challenges and estimations
Hart, C. E., Gadiya, Y., Kind, T., Krettler, C. A., Gaetz, M., Misra, B. B., Healey, D., Allen, A., Colluru, V., Domingo-Fernandez, D.
10.1101/2025.01.08.631938 — Posted: 2025-01-13 — Discussion: 2025-05-06  GigaScience
RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species
Kainer, D., Lane, M., Sullivan, K. A., Miller, J. I., Cashman, M., Morgan, M., Cliff, A., Romero, J., Walker, A., Blair, D. D., Chhetri, H., Wang, Y., Pavicic, M., Furches, A., Noshay, J., Drake, M., Landry, N., Ireland, A., Missaoui, A., Kang, Y., Sedbrook, J., Dehal, P., Canon, S., Jacobson, D. A.
10.1101/2024.07.17.603975 — Posted: 2024-07-19 — Discussion: 2025-05-06  GigaScience
Network-based anomaly detection algorithm reveals proteins with major roles in human tissues
Kagan, D., Jubran, J., Yeger-Lotem, E., Fire, M.
10.1101/2023.12.19.572354 — Posted: 2023-12-20 — Discussion: 2025-04-28  GigaScience
Genomic and transcriptomic analyses of Heteropoda venatoria reveal the expansion of P450 family for starvation resistance in spider
Zhang, G., Wang, Y., Jiang, H., Wang, Y.
10.1101/2024.07.31.605936 — Posted: 2024-07-31 — Discussion: 2025-04-03  GigaScience
Healthy microbiome - moving towards functional interpretation
Zielinska, K., Rudnicki, W., Kosciolek, T., Labaj, P. P.
10.1101/2023.12.04.569909 — Posted: 2023-12-05 — Discussion: 2025-04-03  GigaScience
TransHLA: A Hybrid Transformer Model for HLA-Presented Epitope Detection
LU, T., Wang, X., Nie, W., Huo, M., Li, S.
10.1101/2025.01.20.634002 — Posted: 2025-01-24 — Discussion: 2025-03-03  GigaScience

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