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442 Reviews — GigaScience — All Subjects

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Housekeeping genes, revisited at the single-cell level
Lin, Y., Ghazanfar, S., Strbenac, D., Wang, A., Patrick, E., Speed, T., Yang, J., Yang, P.
10.1101/229815 — Posted: 2017-12-06 — Discussion: 2022-01-31  GigaScience
VAPPER: High-throughput Variant Antigen Profiling in African trypanosomes
Silva Pereira, S., Heap, J., Jones, A. R., Jackson, A. P.
10.1101/492074 — Posted: 2018-12-10 — Discussion: 2022-01-31  GigaScience
Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome
Song, B., Song, Y., Fu, Y., Kizito, E. B., Kabod, P. N., Liu, H., Kamenya, S. N., Muthemba, S., Kariba, R., Li, X., Wang, S., Cheng, S., Muchugi, A., Jamnadass, R., Shapiro, H.-Y., Deynze, A. V., Yang, H., Wang, J., Xu, X., Odeny, D. A., Liu, X.
10.1101/532077 — Posted: 2019-01-28 — Discussion: 2022-01-31  GigaScience
Refgenie: a reference genome resource manager
Stolarczyk, M., Reuter, V. P., Magee, N. E., Sheffield, N. C.
10.1101/698704 — Posted: 2019-07-12 — Discussion: 2022-01-31  GigaScience
Morphometric analysis of Passiflora leaves I: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Daniel H Chitwood, Wagner C Otoni
10.1101/067512 — Posted: 2016-08-03 — Discussion: 2022-01-26  GigaScience
Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets
Johnson, E. C., Wilt, M., Rodriguez, L. M., Norman-Tenazas, R., Rivera, C., Drenkow, N., Kleissas, D., LaGrow, T. J., Cowley, H. P., Downs, J., Matelsky, J., Hughes, M., Reilly, E., Wester, B., Dyer, E., Kording, K., Gray-Roncal, W.
10.1101/615161 — Posted: 2019-04-22 — Discussion: 2022-01-26  GigaScience
Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines
Dozmorov, M. G., Tyc, K. M., Sheffield, N. C., Boyd, D. C., Olex, A. L., Reed, J., Harrell, J. C.
10.1101/2020.10.17.343814 — Posted: 2020-10-17 — Discussion: 2022-01-24  GigaScience
CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, V. A., Alkhnbashi, O. S., Shah, S. A., de Carvalho, A. C. P. L. F., Backofen, R.
10.1101/817619 — Posted: 2019-10-31 — Discussion: 2022-01-24  GigaScience
Long-reads assembly of the Brassica napus reference genome, Darmor-bzh
Rousseau-Gueutin, M., Belser, C., Da Silva, C., Richard, G., Istace, B., Cruaud, C., Falentin, C., Boideau, F., Boutte, J., Delourme, R., Deniot, G., Engelen, S., Ferreira de Carvalho, J., Lemainque, A., Maillet, L., Morice, J., Wincker, P., Denoeud, F., Chevre, A.-M., Aury, J.-M.
10.1101/2020.07.22.215749 — Posted: 2020-07-22 — Discussion: 2022-01-24  GigaScience

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