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406 Reviews — GigaScience — All Subjects

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The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D., Medema, M. H.
10.1101/2020.08.17.240838 — Posted: 2020-08-18 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Pacific oyster (Crassostrea gigas)
Penaloza, C., Gutierrez, A. P., Eory, L., Wang, S., Guo, X., Archibald, A. L., Bean, T. P., Houston, R. D.
10.1101/2020.09.25.313494 — Posted: 2020-09-25 — Discussion: 2022-01-24  GigaScience
Fluorescence Microscopy Datasets for Training Deep Neural Networks
Hagen, G. M., Bendesky, J., Machado, R., Nguyen, T.-A., Kumar, T., Ventura, J.
10.1101/2020.06.17.158097 — Posted: 2020-06-18 — Discussion: 2022-01-24  GigaScience
SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data
Young, M. D., Behjati, S.
10.1101/303727 — Posted: 2018-04-20 — Discussion: 2022-01-24  GigaScience
MB-GAN: Microbiome Simulation via Generative Adversarial Network
Rong, R., Jiang, S., Xu, L., Xiao, G., Xie, Y., Liu, D. J., Li, Q., Zhan, X.
10.1101/863977 — Posted: 2019-12-04 — Discussion: 2022-01-24  GigaScience
Efficiently processing amplicon sequencing data for microbial ecology with dadasnake, a DADA2 implementation in Snakemake
Weissbecker, C., Schnabel, B., Heintz-Buschart, A.
10.1101/2020.05.17.095679 — Posted: 2020-05-19 — Discussion: 2022-01-24  GigaScience
Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network
Zhou, X., Chai, H., Zhao, H., Luo, C.-H., Yang, Y.
10.1101/803692 — Posted: 2019-10-13 — Discussion: 2022-01-24  GigaScience
Chromatin conformation capture (Hi-C) sequencing of patient-derived xenografts: analysis guidelines
Dozmorov, M. G., Tyc, K. M., Sheffield, N. C., Boyd, D. C., Olex, A. L., Reed, J., Harrell, J. C.
10.1101/2020.10.17.343814 — Posted: 2020-10-17 — Discussion: 2022-01-24  GigaScience

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