bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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Long-read only assembly of Drechmeria coniospora genomes reveals widespread chromosome plasticity and illustrates the limitations of current nanopore methods
Courtine, D., Provaznik, J., Reboul, J., Blanc, G., Benes, V., Ewbank, J. J.
10.1101/866020 — Posted: 2019-12-06 — Discussion: 2022-01-24  GigaScience
Chromosome-level genome assemblies of the malaria vectors Anopheles coluzzii and Anopheles arabiensis
Zamyatin, A., Avdeyev, P., Liang, J., Sharma, A., Chen, C., Lukyanchikova, V., Alexeev, N., Tu, Z., Alekseyev, M. A., Sharakhov, I. V.
10.1101/2020.09.29.318477 — Posted: 2020-09-29 — Discussion: 2022-01-24  GigaScience
The germline mutational process in rhesus macaque and its implications for phylogenetic dating
Bergeron, L. A., Besenbacher, S., Bakker, J., Zheng, J., Li, P., Pacheco, G., Sinding, M.-H. S., Kamilari, M., Gilbert, M. T. P., Schierup, M. H., Zhang, G.
10.1101/2020.06.22.164178 — Posted: 2020-06-23 — Discussion: 2022-01-24  GigaScience
ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture
Gaggion, N., Ariel, F., Daric, V., Lambert, E., Legendre, S., Roule, T., Camoirano, A., Milone, D. H., Crespi, M., Blein, T., Ferrante, E.
10.1101/2020.10.27.350553 — Posted: 2020-10-27 — Discussion: 2022-01-24  GigaScience
HTSlib - C library for reading/writing high-throughput sequencing data
Bonfield, J. K., Marshall, J., Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T., Davies, R. M.
10.1101/2020.12.16.423064 — Posted: 2020-12-16 — Discussion: 2022-01-24  GigaScience
A web-server framework to explore and visualize large genomic variation data in lab and its applications to wheat and its progenitors
Wang, W., Wang, Z., Li, X., Ni, Z., Hu, Z., Xin, M., Peng, H., Yao, Y., Sun, Q., Guo, W.
10.1101/626705 — Posted: 2019-05-16 — Discussion: 2022-01-24  GigaScience
The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24  GigaScience
EWAS-Galaxy: a tools suite for population epigenetics integrated into Galaxy
Murat, K., Gruning, B., Poterlowicz, P. W., Westgate, G., Tobin, D. J., Poterlowicz, K.
10.1101/553784 — Posted: 2019-02-19 — Discussion: 2022-01-24  GigaScience
CRISPRCasIdentifier: Machine learning for accurate identification and classification of CRISPR-Cas systems
Padilha, V. A., Alkhnbashi, O. S., Shah, S. A., de Carvalho, A. C. P. L. F., Backofen, R.
10.1101/817619 — Posted: 2019-10-31 — Discussion: 2022-01-24  GigaScience
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D., Medema, M. H.
10.1101/2020.08.17.240838 — Posted: 2020-08-18 — Discussion: 2022-01-24  GigaScience

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