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418 Reviews — GigaScience — All Subjects

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Imputing missing RNA-seq data from DNA methylation by using transfer learning based-deep neural network
Zhou, X., Chai, H., Zhao, H., Luo, C.-H., Yang, Y.
10.1101/803692 — Posted: 2019-10-13 — Discussion: 2022-01-24  GigaScience
HTSlib - C library for reading/writing high-throughput sequencing data
Bonfield, J. K., Marshall, J., Danecek, P., Li, H., Ohan, V., Whitwham, A., Keane, T., Davies, R. M.
10.1101/2020.12.16.423064 — Posted: 2020-12-16 — Discussion: 2022-01-24  GigaScience
The Gene-Rich Genome of the Scallop Pecten maximus
Kenny, N. J., McCarthy, S. A., Dudchenko, O., James, K., Betteridge, E., Corton, C., Dolucan, J., Mead, D., Oliver, K., Omer, A. D., Pelan, S., Ryan, Y., Sims, Y., Skelton, J., Smith, M., Torrance, J., Weisz, D., Wipat, A., Aiden, E. L., Howe, K., Williams, S. T.
10.1101/2020.01.08.887828 — Posted: 2020-01-09 — Discussion: 2022-01-24  GigaScience
An improved pig reference genome sequence to enable pig genetics and genomics research
Warr, A., Affara, N., Aken, B., Beiki, H., Bickhart, D. M., Billis, K., Chow, W., Eory, L., Finlayson, H. A., Flicek, P., Giron, C. G., Griffin, D. K., Hall, R., Hannum, G., Hourlier, T., Howe, K., Hume, D. A., Izuogu, O., Kim, K., Koren, S., Liu, H., Manchanda, N., Martin, F. J., Nonneman, D. J., O'Connor, R. E., Phillippy, A. M., Rohrer, G. A., Rosen, B. D., Rund, L. A., Sargent, C. A., Schook, L. B., Schroeder, S. G., Schwartz, A. S., Skinner, B. M., Talbot, R., Tseng, E., Tuggle, C. K., Watson, M., Smith, T. P., Archibald, A. L.
10.1101/668921 — Posted: 2019-06-13 — Discussion: 2022-01-24  GigaScience
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D., Medema, M. H.
10.1101/2020.08.17.240838 — Posted: 2020-08-18 — Discussion: 2022-01-24  GigaScience
Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Bhagwat, N., Barry, A., Dickie, E. W., Brown, S. T., Devenyi, G. A., Hatano, K., DuPre, E., Dagher, A., Chakravarty, M. M., Greenwood, C. M. T., Misic, B., Kennedy, D. N., Poline, J.-B.
10.1101/2020.05.22.100180 — Posted: 2020-05-26 — Discussion: 2022-01-24  GigaScience
Fluorescence Microscopy Datasets for Training Deep Neural Networks
Hagen, G. M., Bendesky, J., Machado, R., Nguyen, T.-A., Kumar, T., Ventura, J.
10.1101/2020.06.17.158097 — Posted: 2020-06-18 — Discussion: 2022-01-24  GigaScience
Multi-Dimensional Machine Learning Approaches for Fruit Shape Recognition and Phenotyping in Strawberry
Feldmann, M. J., Hardigan, M. A., Famula, R. A., Lopez, C. M., Tabb, A., Cole, G. S., Knapp, S. J.
10.1101/736397 — Posted: 2019-08-15 — Discussion: 2022-01-24  GigaScience
Draft genome assemblies using sequencing reads from Oxford Nanopore Technology and Illumina platforms for four species of North American killifish from the Fundulus genus
Johnson, L. K., Sahasrabudhe, R., Gill, T., Roach, J. L., Froenicke, L., Brown, C. T., Whitehead, A.
10.1101/686246 — Posted: 2019-06-28 — Discussion: 2022-01-24  GigaScience
A chromosome-level genome assembly for the Pacific oyster (Crassostrea gigas)
Penaloza, C., Gutierrez, A. P., Eory, L., Wang, S., Guo, X., Archibald, A. L., Bean, T. P., Houston, R. D.
10.1101/2020.09.25.313494 — Posted: 2020-09-25 — Discussion: 2022-01-24  GigaScience

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