bioRxiv/medRxiv TRiP Review Activity

442 Reviews — GigaScience — All Subjects

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Refgenie: a reference genome resource manager
Stolarczyk, M., Reuter, V. P., Magee, N. E., Sheffield, N. C.
10.1101/698704 — Posted: 2019-07-12 — Discussion: 2022-01-31  GigaScience
ascend: R package for analysis of single cell RNA-seq data
Senabouth, A., Lukowski, S., Alquicira, J., Andersen, S., Mei, X., Nguyen, Q., Powell, J.
10.1101/207704 — Posted: 2017-10-23 — Discussion: 2022-01-31  GigaScience
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
Bushmanova, E., Antipov, D., Lapidus, A., Przhibelskiy, A. D.
10.1101/420208 — Posted: 2018-09-18 — Discussion: 2022-01-31  GigaScience
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies
Atkinson, J. A., Lobet, G., Noll, M., Meyer, P. E., Griffiths, M., Wells, D. M.
10.1101/152702 — Posted: 2017-06-20 — Discussion: 2022-01-31  GigaScience
Morphometric analysis of Passiflora leaves I: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Daniel H Chitwood, Wagner C Otoni
10.1101/067512 — Posted: 2016-08-03 — Discussion: 2022-01-26  GigaScience
Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets
Johnson, E. C., Wilt, M., Rodriguez, L. M., Norman-Tenazas, R., Rivera, C., Drenkow, N., Kleissas, D., LaGrow, T. J., Cowley, H. P., Downs, J., Matelsky, J., Hughes, M., Reilly, E., Wester, B., Dyer, E., Kording, K., Gray-Roncal, W.
10.1101/615161 — Posted: 2019-04-22 — Discussion: 2022-01-26  GigaScience
High-quality chromosome-scale assembly of the walnut (Juglans regia L) reference genome
Marrano, A., Britton, M., Zaini, P. A., Zimin, A., Workman, R., Puiu, D., Bianco, L., Di Pierro, E. A., Allen, B., Chakraborty, S., Troggio, M., Leslie, C., Timp, W., Dendekar, A., Salzberg, S., Neale, D. B.
10.1101/809798 — Posted: 2019-10-17 — Discussion: 2022-01-24  GigaScience
Multivariate GWAS: Generalized Linear Models, Prior Weights, and Double Sparsity
Chu, B. B., Keys, K. L., Sinsheimer, J. S., Lange, K.
10.1101/697755 — Posted: 2019-07-11 — Discussion: 2022-01-24  GigaScience
Sequencing smart: De novo sequencing and assembly approaches for non-model mammals.
Etherington, G. J., Heavens, D., Baker, D., Lister, A., McNelly, R., Garcia Accinelli, G., Clavijo, B. J., Macaulay, I., Haerty, W., Di Palma, F.
10.1101/723890 — Posted: 2019-08-05 — Discussion: 2022-01-24  GigaScience
Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of hexaploid wheat and diploid Aegilops tauschii
Lu, F.-H., McKenzie, N., Gardiner, L.-J., Luo, M., Hall, A., Bevan, M. W.
10.1101/571133 — Posted: 2019-03-07 — Discussion: 2022-01-24  GigaScience

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