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418 Reviews — GigaScience — All Subjects

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ExTaxsI: an exploration tool of biodiversity molecular data
Agostinetto, G., Sandionigi, A., Chahed, A., Brusati, A., Parladori, E., Balech, B., Bruno, A., Pescini, D., Casiraghi, M.
10.1101/2020.11.05.369983 — Posted: 2020-11-06 — Discussion: 2022-03-14  GigaScience
Comparative Analysis of common alignment tools for single cell RNA sequencing
Bruening, R. S., Tombor, L., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2021.02.15.430948 — Posted: 2021-02-16 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
PathwayMatcher: multi-omics pathway mapping and proteoform network generation
Hernandez Sanchez, L. F., Burger, B., Horro, C., Fabregat, A., Johansson, S., Njolstad, P. R., Barsnes, H., Hermjakob, H., Vaudel, M.
10.1101/375097 — Posted: 2018-07-23 — Discussion: 2022-03-14  GigaScience
Interpretable network-guided epistasis detection
Duroux, D., Climente-Gonzales, H., Azencott, C.-A., Van Steen, K.
10.1101/2020.09.24.310136 — Posted: 2020-09-25 — Discussion: 2022-03-14  GigaScience
Democratizing Data-Independent Acquisition Proteomics Analysis on Public Cloud Infrastructures Via The Galaxy Framework
Fahrner, M., Foell, M. C., Gruening, B., Bernt, M., Rost, H., Schilling, O.
10.1101/2021.07.21.453197 — Posted: 2021-07-22 — Discussion: 2022-03-14  GigaScience
MBGC: Multiple Bacteria Genome Compressor
Grabowski, S. P., Kowalski, T. M.
10.1101/2020.12.09.411678 — Posted: 2020-12-09 — Discussion: 2022-03-14  GigaScience
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Sheffield, N. C., Stolarczyk, M., Reuter, V. P., Rendeiro, A.
10.1101/2020.10.08.331322 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
Foell, M. C., Moritz, L., Wollmann, T., Stillger, M., Vockert, N., Werner, M., Bronsert, P., Rohr, K., Gruening, B., Schilling, O.
10.1101/628719 — Posted: 2019-05-05 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience

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