bioRxiv/medRxiv TRiP Review Activity

394 Reviews — GigaScience — All Subjects

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PathwayMatcher: multi-omics pathway mapping and proteoform network generation
Hernandez Sanchez, L. F., Burger, B., Horro, C., Fabregat, A., Johansson, S., Njolstad, P. R., Barsnes, H., Hermjakob, H., Vaudel, M.
10.1101/375097 — Posted: 2018-07-23 — Discussion: 2022-03-14  GigaScience
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS
Sriram, V., Shivakumar, M., Jung, S.-H., Bang, L., Verma, A., Lee, S., Choe, E. K., Kim, D.
10.1101/2020.10.27.357103 — Posted: 2020-10-27 — Discussion: 2022-03-14  GigaScience
A high-throughput multiplexing and selection strategy to complete bacterial genomes
Arredondo-Alonso, S., Pöntinen, A. K., Cleon, F., Gladstone, R. A., Schürch, A. C., Johnsen, P. J., Samuelsen, O., Corander, J.
10.1101/2021.06.14.448320 — Posted: 2021-06-14 — Discussion: 2022-03-14  GigaScience
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
Foell, M. C., Moritz, L., Wollmann, T., Stillger, M., Vockert, N., Werner, M., Bronsert, P., Rohr, K., Gruening, B., Schilling, O.
10.1101/628719 — Posted: 2019-05-05 — Discussion: 2022-03-14  GigaScience
Fully resolved assembly of Cryptosporidium parvum
Menon, V. K., Okhuysen, P. C., Chappell, C., Mahmoud, M., Meng, Q., Vee, V., Doddapaneni, H., Han, Y., Salvi, S., Bhamidipati, S., Kottapalli, K., Weissenberger, G., Shen, H., Ross, M. C., Hoffman, K. L., Cregeen, S. J., Muzny, D. M., Metcalf, G. A., Gibbs, R. A., Petrosino, J. F., Sedlazeck, F. J.
10.1101/2021.07.07.451495 — Posted: 2021-07-08 — Discussion: 2022-03-14  GigaScience
Genome size evolution in the diverse insect order Trichoptera
Heckenhauer, J., Frandsen, P. B., Sproul, J. S., Li, Z., Paule, J., Larracuente, A. M., Maughan, P. J., Barker, M. S., Schneider, J. V., Pauls, S. U.
10.1101/2021.05.10.443368 — Posted: 2021-05-10 — Discussion: 2022-03-14  GigaScience
Assessing species coverage and assembly quality of rapidly accumulating sequenced genomes
Feron, R., Waterhouse, R. M.
10.1101/2021.10.15.464561 — Posted: 2021-10-16 — Discussion: 2022-03-14  GigaScience
A high-quality Genome and Comparison of Short versus Long Read Transcriptome of the Palaearctic duck Aythya fuligula (Tufted Duck)
Mueller, R. C., Ellström, P., Howe, K., Uliano-Silva, M., Kuo, R. I., Miedzinska, K., Warr, A., Fedrigo, O., Haase, B., Mountcastle, J., Chow, W., Torrance, J., Wood, J., Järhult, J. D., Naguib, M. M., Olsen, B., Jarvis, E. D., Smith, J., Eöry, L., Kraus, R. H.
10.1101/2021.02.24.432697 — Posted: 2021-02-25 — Discussion: 2022-03-14  GigaScience
Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)
Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J.-M., Guerif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C.-E., Velasco, R., Neale, D. B., Chagne, D., Van de Peer, Y., Troggio, M., Bianco, L.
10.1101/651778 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
DENTIST - using long reads to close assembly gaps at high accuracy
Ludwig, A., Pippel, M., Myers, G., Hiller, M.
10.1101/2021.02.26.432990 — Posted: 2021-02-27 — Discussion: 2022-03-09  GigaScience

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