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406 Reviews — GigaScience — All Subjects

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From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Sheffield, N. C., Stolarczyk, M., Reuter, V. P., Rendeiro, A.
10.1101/2020.10.08.331322 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
MBGC: Multiple Bacteria Genome Compressor
Grabowski, S. P., Kowalski, T. M.
10.1101/2020.12.09.411678 — Posted: 2020-12-09 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
To assemble or not to resemble -- A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T., Jacobsen, C. S.
10.1101/642348 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
PathwayMatcher: multi-omics pathway mapping and proteoform network generation
Hernandez Sanchez, L. F., Burger, B., Horro, C., Fabregat, A., Johansson, S., Njolstad, P. R., Barsnes, H., Hermjakob, H., Vaudel, M.
10.1101/375097 — Posted: 2018-07-23 — Discussion: 2022-03-14  GigaScience
Arteria: An automation system for a sequencing core facility
Dahlberg, J., Hermansson, J., Sturlaugsson, S., Larsson, P.
10.1101/214858 — Posted: 2017-11-06 — Discussion: 2022-03-14  GigaScience
LED light gradient as a screening tool for light quality responses in model plant species
Lejeune, P., Fratamico, A., Bouche, F., Huerga-Fernandez, S., Tocquin, P., Perilleux, C.
10.1101/2020.10.08.320002 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data
Hoogstrate, Y., Komor, M. A., Böttcher, R., van Riet, J., van de Werken, H. J. G., van Lieshout, S., Hoffmann, R., van den Broek, E., Bolijn, A. S., Dits, N., Sie, D., van der Meer, D., Pepers, F., Bangma, C. H., van Leenders, A. J. H. L., Smid, M., French, P. J., Martens, J. W. M., van Workum, W., van der Spek, P. J., Janssen, B., Caldenhoven, E., Rausch, C., de Jong, M., Stubbs, A. P., Meijer, G. A., Fijneman, R. J. A., Jenster, G.
10.1101/2021.05.17.441778 — Posted: 2021-05-17 — Discussion: 2022-03-14  GigaScience
Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
Foell, M. C., Moritz, L., Wollmann, T., Stillger, M., Vockert, N., Werner, M., Bronsert, P., Rohr, K., Gruening, B., Schilling, O.
10.1101/628719 — Posted: 2019-05-05 — Discussion: 2022-03-14  GigaScience

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