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362 Reviews — GigaScience — All Subjects

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rCASC: reproducible Classification Analysis of Single Cell sequencing data
Alessandri, L., Beccuti, M., Arigoni, M., Olivero, M., Romano, G., De Libero, G., Pace, L., Cordero, F., Calogero, R.
10.1101/430967 — Posted: 2018-10-03 — Discussion: 2022-01-31  GigaScience
Comparison of single nucleotide variants identified by Illumina and Oxford Nanopore technologies in the context of a potential outbreak of Shiga Toxin Producing Escherichia coli.
Dallman, T., Jenkins, C., Gharbia, S., Greig, D.
10.1101/570192 — Posted: 2019-03-06 — Discussion: 2022-01-31  GigaScience
Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies
Atkinson, J. A., Lobet, G., Noll, M., Meyer, P. E., Griffiths, M., Wells, D. M.
10.1101/152702 — Posted: 2017-06-20 — Discussion: 2022-01-31  GigaScience
SeQuiLa-cov: A fast and scalable library for depth of coverage calculations
Wiewiorka, M., Szmurlo, A., Kusmirek, W., Gambin, T.
10.1101/494468 — Posted: 2018-12-13 — Discussion: 2022-01-31  GigaScience
Machado: open source genomics data integration framework
Mudadu, M. d. A., Zerlotini, A.
10.1101/2020.05.08.084731 — Posted: 2020-05-10 — Discussion: 2022-01-31  GigaScience
Managing The Analysis Of High-Throughput Sequencing Data
Quilez, J., Vidal, E., Le Dily, F., Serra, F., Cuartero, Y., Stadhouders, R., Filion, G., Graf, T., Marti-Renom, M. A., Beato, M.
10.1101/136358 — Posted: 2017-05-10 — Discussion: 2022-01-31  GigaScience
PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
Bayliss, S. C., Thorpe, H. A., Coyle, N. M., Sheppard, S. K., Feil, E. J.
10.1101/598391 — Posted: 2019-04-05 — Discussion: 2022-01-31  GigaScience
Housekeeping genes, revisited at the single-cell level
Lin, Y., Ghazanfar, S., Strbenac, D., Wang, A., Patrick, E., Speed, T., Yang, J., Yang, P.
10.1101/229815 — Posted: 2017-12-06 — Discussion: 2022-01-31  GigaScience
VAPPER: High-throughput Variant Antigen Profiling in African trypanosomes
Silva Pereira, S., Heap, J., Jones, A. R., Jackson, A. P.
10.1101/492074 — Posted: 2018-12-10 — Discussion: 2022-01-31  GigaScience
Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome
Song, B., Song, Y., Fu, Y., Kizito, E. B., Kabod, P. N., Liu, H., Kamenya, S. N., Muthemba, S., Kariba, R., Li, X., Wang, S., Cheng, S., Muchugi, A., Jamnadass, R., Shapiro, H.-Y., Deynze, A. V., Yang, H., Wang, J., Xu, X., Odeny, D. A., Liu, X.
10.1101/532077 — Posted: 2019-01-28 — Discussion: 2022-01-31  GigaScience

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