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394 Reviews — GigaScience — All Subjects

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ExTaxsI: an exploration tool of biodiversity molecular data
Agostinetto, G., Sandionigi, A., Chahed, A., Brusati, A., Parladori, E., Balech, B., Bruno, A., Pescini, D., Casiraghi, M.
10.1101/2020.11.05.369983 — Posted: 2020-11-06 — Discussion: 2022-03-14  GigaScience
MBGC: Multiple Bacteria Genome Compressor
Grabowski, S. P., Kowalski, T. M.
10.1101/2020.12.09.411678 — Posted: 2020-12-09 — Discussion: 2022-03-14  GigaScience
Interpretable network-guided epistasis detection
Duroux, D., Climente-Gonzales, H., Azencott, C.-A., Van Steen, K.
10.1101/2020.09.24.310136 — Posted: 2020-09-25 — Discussion: 2022-03-14  GigaScience
Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering
Miladi, M., Sokhoyan, E., Houwaart, T., Heyne, S., Costa, F., Gruening, B., Backofen, R.
10.1101/550335 — Posted: 2019-02-20 — Discussion: 2022-03-14  GigaScience
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Sheffield, N. C., Stolarczyk, M., Reuter, V. P., Rendeiro, A.
10.1101/2020.10.08.331322 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Benchmark of lncRNA Quantification for RNA-Seq of Cancer Samples
Zheng, H., Brennan, K., Hernaez, M., Gevaert, O.
10.1101/241869 — Posted: 2018-01-02 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data
Hoogstrate, Y., Komor, M. A., Böttcher, R., van Riet, J., van de Werken, H. J. G., van Lieshout, S., Hoffmann, R., van den Broek, E., Bolijn, A. S., Dits, N., Sie, D., van der Meer, D., Pepers, F., Bangma, C. H., van Leenders, A. J. H. L., Smid, M., French, P. J., Martens, J. W. M., van Workum, W., van der Spek, P. J., Janssen, B., Caldenhoven, E., Rausch, C., de Jong, M., Stubbs, A. P., Meijer, G. A., Fijneman, R. J. A., Jenster, G.
10.1101/2021.05.17.441778 — Posted: 2021-05-17 — Discussion: 2022-03-14  GigaScience
To assemble or not to resemble -- A validated Comparative Metatranscriptomics Workflow (CoMW)
Anwar, M. Z., Lanzen, A., Bang-Andreasen, T., Jacobsen, C. S.
10.1101/642348 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
DENTIST - using long reads to close assembly gaps at high accuracy
Ludwig, A., Pippel, M., Myers, G., Hiller, M.
10.1101/2021.02.26.432990 — Posted: 2021-02-27 — Discussion: 2022-03-09  GigaScience

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