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418 Reviews — GigaScience — All Subjects

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Standardized genome-wide function prediction enables comparative functional genomics in plants: a new application area for Gene Ontologies
Fattel, L., Psaroudakis, D., Yanarella, C., Chiteri, K., Dostalik, H. A., Joshi, P., Starr, D. C., Vu, H., Wimalanathan, K., Lawrence-Dill, C. J.
10.1101/2021.04.25.441366 — Posted: 2021-04-28 — Discussion: 2022-08-09  GigaScience
Predicting plant biomass accumulation from image-derived parameters
Dijun Chen, Rongli Shi, Jean-Michel Pape, Christian Klukas
10.1101/046656 — Posted: 2016-03-31 — Discussion: 2022-06-23  GigaScience
A practical tool for Maximal Information Coefficient analysis
Albanese, D., Riccadonna, S., Donati, C., Franceschi, P.
10.1101/215855 — Posted: 2017-11-07 — Discussion: 2022-06-23  GigaScience
The haplotype-resolved chromosome pairs and transcriptome of a heterozygous diploid African cassava cultivar
Qi, W., Lim, Y.-W., Patrignani, A., Schlaepfer, P., Bratus-Neuenschwander, A., Grueter, S., Chanez, C., Rodde, N., Prat, E., Vautrin, S., Fustier, M.-A., Pratas, D., Schlapbach, R., Gruissem, W.
10.1101/2021.11.16.468774 — Posted: 2021-11-19 — Discussion: 2022-04-08  GigaScience
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Poudel, R., Trujillo Rodriguez, L., Reisch, C. R., Rivers, A. R.
10.1101/2021.06.28.450164 — Posted: 2021-06-29 — Discussion: 2022-04-08  GigaScience
Triku: a feature selection method based on nearest neighbors for single-cell data
Ascension, A. M., Ibanez-Sole, O., Inza, I., Izeta, A., Arauzo-Bravo, M. J.
10.1101/2021.02.12.430764 — Posted: 2021-02-16 — Discussion: 2022-03-20  GigaScience
NETMAGE: a humaN-disEase phenoType MAp GEnerator for the Visualization of PheWAS
Sriram, V., Shivakumar, M., Jung, S.-H., Bang, L., Verma, A., Lee, S., Choe, E. K., Kim, D.
10.1101/2020.10.27.357103 — Posted: 2020-10-27 — Discussion: 2022-03-14  GigaScience
A high-throughput multiplexing and selection strategy to complete bacterial genomes
Arredondo-Alonso, S., Pöntinen, A. K., Cleon, F., Gladstone, R. A., Schürch, A. C., Johnsen, P. J., Samuelsen, O., Corander, J.
10.1101/2021.06.14.448320 — Posted: 2021-06-14 — Discussion: 2022-03-14  GigaScience
Fully resolved assembly of Cryptosporidium parvum
Menon, V. K., Okhuysen, P. C., Chappell, C., Mahmoud, M., Meng, Q., Vee, V., Doddapaneni, H., Han, Y., Salvi, S., Bhamidipati, S., Kottapalli, K., Weissenberger, G., Shen, H., Ross, M. C., Hoffman, K. L., Cregeen, S. J., Muzny, D. M., Metcalf, G. A., Gibbs, R. A., Petrosino, J. F., Sedlazeck, F. J.
10.1101/2021.07.07.451495 — Posted: 2021-07-08 — Discussion: 2022-03-14  GigaScience
Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
Kim, H.-S., Jeon, S., Kim, C., Kim, Y. K., Cho, Y. S., Blazyte, A., Manica, A., Lee, S., Bhak, J.
10.1101/674804 — Posted: 2019-06-19 — Discussion: 2022-03-14  GigaScience

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