bioRxiv/medRxiv TRiP Review Activity

234 Reviews — GigaScience — Bioinformatics

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Understanding the impact of preprocessing pipelines on neuroimaging cortical surface analyses
Bhagwat, N., Barry, A., Dickie, E. W., Brown, S. T., Devenyi, G. A., Hatano, K., DuPre, E., Dagher, A., Chakravarty, M. M., Greenwood, C. M. T., Misic, B., Kennedy, D. N., Poline, J.-B.
10.1101/2020.05.22.100180 — Posted: 2020-05-26 — Discussion: 2022-01-24  GigaScience
SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data
Young, M. D., Behjati, S.
10.1101/303727 — Posted: 2018-04-20 — Discussion: 2022-01-24  GigaScience
Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements
Hosseini, M., Pratas, D., Morgenstern, B., Pinho, A. J.
10.1101/2019.12.23.887349 — Posted: 2019-12-25 — Discussion: 2022-01-24  GigaScience
Streamlining Data-Intensive Biology With Workflow Systems
Reiter, T., Brooks, P. T., Irber, L., Joslin, S. E. K., Reid, C. M., Scott, C., Brown, C. T., Pierce, N. T.
10.1101/2020.06.30.178673 — Posted: 2020-07-01 — Discussion: 2022-01-24  GigaScience
Trans-NanoSim characterizes and simulates nanopore RNA-seq data
Hafezqorani, S., Yang, C., Nip, K. M., Warren, R. L., Birol, I.
10.1101/800110 — Posted: 2019-10-10 — Discussion: 2022-01-24  GigaScience
BiG-SLiCE: A Highly Scalable Tool Maps the Diversity of 1.2 Million Biosynthetic Gene Clusters
Kautsar, S. A., van der Hooft, J. J. J., de Ridder, D., Medema, M. H.
10.1101/2020.08.17.240838 — Posted: 2020-08-18 — Discussion: 2022-01-24  GigaScience
Tool recommender system in Galaxy using deep learning
Kumar, A., Gruening, B., Backofen, R.
10.1101/838599 — Posted: 2019-11-12 — Discussion: 2022-01-24  GigaScience
Fluorescence Microscopy Datasets for Training Deep Neural Networks
Hagen, G. M., Bendesky, J., Machado, R., Nguyen, T.-A., Kumar, T., Ventura, J.
10.1101/2020.06.17.158097 — Posted: 2020-06-18 — Discussion: 2022-01-24  GigaScience
A web-server framework to explore and visualize large genomic variation data in lab and its applications to wheat and its progenitors
Wang, W., Wang, Z., Li, X., Ni, Z., Hu, Z., Xin, M., Peng, H., Yao, Y., Sun, Q., Guo, W.
10.1101/626705 — Posted: 2019-05-16 — Discussion: 2022-01-24  GigaScience
Correcting for experiment-specific variability in expression compendia can remove underlying signals
Lee, A. J., Park, Y., Doing, G., Hogan, D. A., Greene, C. S.
10.1101/2020.05.03.066597 — Posted: 2020-05-03 — Discussion: 2022-01-24  GigaScience

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