bioRxiv/medRxiv TRiP Review Activity

418 Reviews — GigaScience — All Subjects

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SurvBenchmark: comprehensive benchmarking study of survival analysis methods using both omics data and clinical data
Zhang, Y., Wong, G., Mann, G., Muller, S., Yang, J. Y. H.
10.1101/2021.07.11.451967 — Posted: 2021-07-12 — Discussion: 2023-03-01  GigaScience
Meta-Prism 2.0: Enabling algorithm for ultra-fast, accurate and memory-efficient search among millions of microbial community samples
Kang, K., Chong, H., Ning, K.
10.1101/2020.11.17.387811 — Posted: 2020-11-20 — Discussion: 2023-03-01  GigaScience
DeePVP: Identification and classification of phage virion protein using deep learning
Fang, Z., Feng, T., Zhou, H.
10.1101/2021.10.23.465539 — Posted: 2021-10-24 — Discussion: 2023-03-01  GigaScience
Disease classification for whole blood DNA methylation: meta-analysis, missing values imputation, and XAI
Kalyakulina, A., Yusipov, I., Bacalini, M. G., Franceschi, C., Vedunova, M., Ivanchenko, M.
10.1101/2022.05.10.491404 — Posted: 2022-05-11 — Discussion: 2023-02-17  GigaScience
A curated human cellular microRNAome based on 196 primary cell types
Patil, A. H., Baran, A., Brehm, Z., McCall, M. N., Halushka, M. K.
10.1101/2022.05.16.492160 — Posted: 2022-05-17 — Discussion: 2023-02-17  GigaScience
Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other non-standard architectures in genome assemblies.
Naranjo-Ortiz, M. A., Molina, M., Mixao, V., Gabaldon, T.
10.1101/2021.05.23.445324 — Posted: 2021-05-23 — Discussion: 2023-02-17  GigaScience
BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga, C., Sanchez, E., Galvao Ferrarini, M., Gutierrez, R. A., Vidal, E. A., Sagot, M.-F.
10.1101/2020.08.07.240689 — Posted: 2020-08-07 — Discussion: 2023-02-17  GigaScience
High-Spatiotemporal-Resolution Nanopore Sequencing of SARS-CoV-2 and Host Cell RNAs
Tombacz, D., Dormo, A., Gulyas, G., Csabai, Z., Prazsak, I., Kakuk, B., Harangozo, A., Jankovics, I., Denes, B., Boldogkoi, Z.
10.1101/2021.08.20.457128 — Posted: 2021-08-20 — Discussion: 2023-02-17  GigaScience
Association Mapping Across a Multitude of Traits Collected in Diverse Environments Identifies Pleiotropic Loci in Maize.
Mural, R. V., Sun, G., Grzybowski, M., Tross, M. C., Jin, H., Smith, C., Newton, L., Andorf, C. M., Woodhouse, M. R., Thompson, A. M., Sigmon, B. V., Schnable, J. C.
10.1101/2022.02.25.480753 — Posted: 2022-02-25 — Discussion: 2023-02-17  GigaScience
Spacemake: processing and analysis of large-scale spatial transcriptomics data
Sztanka-Toth, T. R., Jens, M., Karaiskos, N., Rajewsky, N.
10.1101/2021.11.07.467598 — Posted: 2021-11-08 — Discussion: 2023-02-15  GigaScience

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