bioRxiv/medRxiv TRiP Review Activity

336 Reviews — GigaScience — All Subjects

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PIRATE: A fast and scalable pangenomics toolbox for clustering diverged orthologues in bacteria
Bayliss, S. C., Thorpe, H. A., Coyle, N. M., Sheppard, S. K., Feil, E. J.
10.1101/598391 — Posted: 2019-04-05 — Discussion: 2022-01-31  GigaScience
Machado: open source genomics data integration framework
Mudadu, M. d. A., Zerlotini, A.
10.1101/2020.05.08.084731 — Posted: 2020-05-10 — Discussion: 2022-01-31  GigaScience
Housekeeping genes, revisited at the single-cell level
Lin, Y., Ghazanfar, S., Strbenac, D., Wang, A., Patrick, E., Speed, T., Yang, J., Yang, P.
10.1101/229815 — Posted: 2017-12-06 — Discussion: 2022-01-31  GigaScience
VAPPER: High-throughput Variant Antigen Profiling in African trypanosomes
Silva Pereira, S., Heap, J., Jones, A. R., Jackson, A. P.
10.1101/492074 — Posted: 2018-12-10 — Discussion: 2022-01-31  GigaScience
Draft genome sequence of the Solanum aethiopicum provides insights into disease resistance, drought tolerance and the evolution of the genome
Song, B., Song, Y., Fu, Y., Kizito, E. B., Kabod, P. N., Liu, H., Kamenya, S. N., Muthemba, S., Kariba, R., Li, X., Wang, S., Cheng, S., Muchugi, A., Jamnadass, R., Shapiro, H.-Y., Deynze, A. V., Yang, H., Wang, J., Xu, X., Odeny, D. A., Liu, X.
10.1101/532077 — Posted: 2019-01-28 — Discussion: 2022-01-31  GigaScience
Refgenie: a reference genome resource manager
Stolarczyk, M., Reuter, V. P., Magee, N. E., Sheffield, N. C.
10.1101/698704 — Posted: 2019-07-12 — Discussion: 2022-01-31  GigaScience
rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data
Bushmanova, E., Antipov, D., Lapidus, A., Przhibelskiy, A. D.
10.1101/420208 — Posted: 2018-09-18 — Discussion: 2022-01-31  GigaScience
ascend: R package for analysis of single cell RNA-seq data
Senabouth, A., Lukowski, S., Alquicira, J., Andersen, S., Mei, X., Nguyen, Q., Powell, J.
10.1101/207704 — Posted: 2017-10-23 — Discussion: 2022-01-31  GigaScience
Toward A Reproducible, Scalable Framework for Processing Large Neuroimaging Datasets
Johnson, E. C., Wilt, M., Rodriguez, L. M., Norman-Tenazas, R., Rivera, C., Drenkow, N., Kleissas, D., LaGrow, T. J., Cowley, H. P., Downs, J., Matelsky, J., Hughes, M., Reilly, E., Wester, B., Dyer, E., Kording, K., Gray-Roncal, W.
10.1101/615161 — Posted: 2019-04-22 — Discussion: 2022-01-26  GigaScience
Morphometric analysis of Passiflora leaves I: the relationship between landmarks of the vasculature and elliptical Fourier descriptors of the blade
Daniel H Chitwood, Wagner C Otoni
10.1101/067512 — Posted: 2016-08-03 — Discussion: 2022-01-26  GigaScience

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