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381 Reviews — GigaScience — All Subjects

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Comparative Analysis of common alignment tools for single cell RNA sequencing
Bruening, R. S., Tombor, L., Schulz, M. H., Dimmeler, S., John, D.
10.1101/2021.02.15.430948 — Posted: 2021-02-16 — Discussion: 2022-03-14  GigaScience
From partial to whole genome imputation of SARS-CoV-2 for epidemiological surveillance
Ortuno, F. M., Loucera, C., Casimiro-Soriguer, C. S., Lepe, J. A., Camacho Martinez, P., Merino Diaz, L., Chueca, N., de Salazar, A., Garcia, F., Perez-Florido, J., Dopazo, J.
10.1101/2021.04.13.439668 — Posted: 2021-04-13 — Discussion: 2022-03-14  GigaScience
Pseudo-chromosome length genome assembly of a double haploid ‘Bartlett’ pear (Pyrus communis L.)
Linsmith, G., Rombauts, S., Montanari, S., Deng, C. H., Celton, J.-M., Guerif, P., Liu, C., Lohaus, R., Zurn, J. D., Cestaro, A., Bassil, N. V., Bakker, L. V., Schijlen, E., Gardiner, S. E., Lespinasse, Y., Durel, C.-E., Velasco, R., Neale, D. B., Chagne, D., Van de Peer, Y., Troggio, M., Bianco, L.
10.1101/651778 — Posted: 2019-05-27 — Discussion: 2022-03-14  GigaScience
Interpretable network-guided epistasis detection
Duroux, D., Climente-Gonzales, H., Azencott, C.-A., Van Steen, K.
10.1101/2020.09.24.310136 — Posted: 2020-09-25 — Discussion: 2022-03-14  GigaScience
Democratizing Data-Independent Acquisition Proteomics Analysis on Public Cloud Infrastructures Via The Galaxy Framework
Fahrner, M., Foell, M. C., Gruening, B., Bernt, M., Rost, H., Schilling, O.
10.1101/2021.07.21.453197 — Posted: 2021-07-22 — Discussion: 2022-03-14  GigaScience
A Galaxy-based training resource for single-cell RNA-seq quality control and analyses.
Etherington, G. J., Soranzo, N., Mohammed, S., Haerty, W., Davey, R., Di-Palma, F.
10.1101/724047 — Posted: 2019-08-04 — Discussion: 2022-03-14  GigaScience
MBGC: Multiple Bacteria Genome Compressor
Grabowski, S. P., Kowalski, T. M.
10.1101/2020.12.09.411678 — Posted: 2020-12-09 — Discussion: 2022-03-14  GigaScience
Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects
Sheffield, N. C., Stolarczyk, M., Reuter, V. P., Rendeiro, A.
10.1101/2020.10.08.331322 — Posted: 2020-10-08 — Discussion: 2022-03-14  GigaScience
Improved chromosome level genome assembly of the Glanville fritillary butterfly (Melitaea cinxia) based on SMRT Sequencing and linkage map.
Blande, D., Smolander, O.-P., Ahola, V., Rastas, P., Tanskanen, J., Kammonen, J. I., Oostra, V., Pellegrini, L., Ikonen, S., Dallas, T., DiLeo, M. F., Duplouy, A., Duru, I. C., Halimaa, P., Kahilainen, A., Kuwar, S. S., Karenlampi, S. O., Lafuente, E., Luo, S., Makkonen, J., Nair, A., Celorio-Mancera, M. d. l. P., Pennanen, V., Ruokolainen, A., Sundell, T., Tervahauta, A. I., Twort, V., van Bergen, E., Osterman-Udd, J., Paulin, L., Frilander, M. J., Auvinen, P., Saastamoinen, M.
10.1101/2020.11.03.364950 — Posted: 2020-11-04 — Discussion: 2022-03-14  GigaScience
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data
Hoogstrate, Y., Komor, M. A., Böttcher, R., van Riet, J., van de Werken, H. J. G., van Lieshout, S., Hoffmann, R., van den Broek, E., Bolijn, A. S., Dits, N., Sie, D., van der Meer, D., Pepers, F., Bangma, C. H., van Leenders, A. J. H. L., Smid, M., French, P. J., Martens, J. W. M., van Workum, W., van der Spek, P. J., Janssen, B., Caldenhoven, E., Rausch, C., de Jong, M., Stubbs, A. P., Meijer, G. A., Fijneman, R. J. A., Jenster, G.
10.1101/2021.05.17.441778 — Posted: 2021-05-17 — Discussion: 2022-03-14  GigaScience

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